Iron out bugs and test first overview script.

maehrlab · Apr 17, 2019 · a80c522 · a80c522
1 parent 0a0fb68
commit a80c522
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/scripts/main.Rmd b/scripts/main.Rmd
@@ -26,7 +26,8 @@ withr::with_libpaths( PATH_TO_PROJECT_PACKAGES, devtools::install_github( "satij
 withr::with_libpaths( PATH_TO_PROJECT_PACKAGES, devtools::install_github( "maehrlab/thymusatlastools" ) )
 withr::with_libpaths( PATH_TO_PROJECT_PACKAGES, devtools::install_github( "ekernf01/freezr" ) )
 if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager")
-BiocManager::install("destiny", version = "3.8" )
+if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
+if (!requireNamespace("destiny", quietly = TRUE)) BiocManager::install("", version = "3.8" )
 library(Seurat,           lib.loc = PATH_TO_PROJECT_PACKAGES)
 library(thymusatlastools, lib.loc = PATH_TO_PROJECT_PACKAGES)
 library(freezr,           lib.loc = PATH_TO_PROJECT_PACKAGES)