Add support for {DataFrame,Series}.mode #6348
Workflow file for this run
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| name: Mars CI on Platforms | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| types: ['opened', 'reopened', 'synchronize'] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8-kubernetes, 3.8-ray, 3.8-ray-deploy, 3.8-ray-dag, 3.8-vineyard, 3.8-dask] | |
| include: | |
| - { os: ubuntu-latest, python-version: 3.8-kubernetes, no-common-tests: 1, | |
| no-deploy: 1, with-kubernetes: "with Kubernetes" } | |
| - { os: ubuntu-20.04, python-version: 3.8-hadoop, no-common-tests: 1, | |
| no-deploy: 1, with-hadoop: "with hadoop" } | |
| - { os: ubuntu-latest, python-version: 3.8-vineyard, no-common-tests: 1, | |
| no-deploy: 1, with-vineyard: "with vineyard" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray, no-common-tests: 1, | |
| no-deploy: 1, with-ray: "with ray" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray-deploy, no-common-tests: 1, | |
| no-deploy: 1, with-ray-deploy: "with ray deploy" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray-dag, no-common-tests: 1, | |
| no-deploy: 1, with-ray-dag: "with ray dag" } | |
| - { os: ubuntu-latest, python-version: 3.8-dask, no-common-tests: 1, | |
| no-deploy: 1, run-dask: "run dask" } | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up conda ${{ matrix.python-version }} | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| shell: bash | |
| run: | | |
| source ./ci/install-conda.sh | |
| python -m pip install --upgrade pip setuptools wheel coverage | |
| - name: Start minikube | |
| if: ${{ matrix.with-kubernetes }} | |
| uses: medyagh/setup-minikube@master | |
| with: | |
| driver: docker | |
| mount-path: '/home/runner:/home/runner' | |
| - name: Install dependencies | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| WITH_VINEYARD: ${{ matrix.with-vineyard }} | |
| WITH_RAY: ${{ matrix.with-ray }} | |
| WITH_RAY_DEPLOY: ${{ matrix.with-ray-deploy }} | |
| WITH_RAY_DAG: ${{ matrix.with-ray-dag }} | |
| RUN_DASK: ${{ matrix.run-dask }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| export DEFAULT_VENV=$VIRTUAL_ENV | |
| source ./ci/rewrite-cov-config.sh | |
| pip install numpy scipy cython | |
| pip install -e ".[dev,extra]" | |
| if [[ $UNAME == "windows" ]]; then | |
| pip install virtualenv flaky | |
| else | |
| pip install virtualenv flaky | |
| if [ -n "$WITH_KUBERNETES" ]; then | |
| pip install kubernetes "pandas<1.5.0" | |
| kubectl get pods -A | |
| fi | |
| if [ -n "$WITH_HADOOP" ]; then | |
| ./ci/install-hadoop.sh | |
| echo "import coverage; coverage.process_startup()" > \ | |
| $(python -c "import site; print(site.getsitepackages()[-1])")/coverage.pth | |
| conda install -n test --quiet --yes -c conda-forge python=$PYTHON skein libffi conda-pack | |
| fi | |
| if [ -n "$WITH_VINEYARD" ]; then | |
| pip install vineyard -i https://pypi.org/simple | |
| mkdir -p /tmp/etcd-download-test | |
| export ETCD_VER=v3.4.13 | |
| export ETCD_DOWNLOAD_URL=https://github.com/etcd-io/etcd/releases/download | |
| curl -L $ETCD_DOWNLOAD_URL/$ETCD_VER/etcd-$ETCD_VER-linux-amd64.tar.gz -o /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz | |
| tar xzvf /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz -C /tmp/etcd-download-test --strip-components=1 | |
| sudo mv /tmp/etcd-download-test/etcd /usr/local/bin/ | |
| sudo mv /tmp/etcd-download-test/etcdctl /usr/local/bin/ | |
| rm -fr /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz /tmp/etcd-download-test | |
| fi | |
| if [ -n "$WITH_RAY" ] || [ -n "$WITH_RAY_DAG" ] || [ -n "$WITH_RAY_DEPLOY" ]; then | |
| pip install "ray>=1.8.0,<2.4.0" | |
| pip install "xgboost_ray<0.1.14" "protobuf<4" | |
| # Ray Datasets need pyarrow>=6.0.1 | |
| pip install "pyarrow>=6.0.1" | |
| pip install lightgbm | |
| fi | |
| if [ -n "$RUN_DASK" ]; then | |
| pip install "dask[complete]" "mimesis<9.0.0" scikit-learn | |
| fi | |
| fi | |
| conda list -n test | |
| - name: Test with pytest | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| WITH_CYTHON: ${{ matrix.with-cython }} | |
| WITH_VINEYARD: ${{ matrix.with-vineyard }} | |
| WITH_RAY: ${{ matrix.with-ray }} | |
| WITH_RAY_DEPLOY: ${{ matrix.with-ray-deploy }} | |
| WITH_RAY_DAG: ${{ matrix.with-ray-dag }} | |
| RUN_DASK: ${{ matrix.run-dask }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| NUMPY_EXPERIMENTAL_ARRAY_FUNCTION: 1 | |
| USE_MINIKUBE_DOCKER_ENV: true | |
| CHANGE_MINIKUBE_NONE_USER: true | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| if [ -n "$WITH_HADOOP" ]; then | |
| source $CONDA/bin/activate test | |
| source ./ci/reload-env.sh | |
| pytest $PYTEST_CONFIG -m hadoop | |
| coverage report | |
| fi | |
| if [ -n "$WITH_KUBERNETES" ]; then | |
| pytest $PYTEST_CONFIG --forked mars/deploy/kubernetes | |
| coverage report | |
| fi | |
| if [ -n "$WITH_VINEYARD" ]; then | |
| pytest $PYTEST_CONFIG mars/storage/tests/test_libs.py | |
| mv .coverage build/.coverage.test_lib.file | |
| pytest $PYTEST_CONFIG mars/deploy/oscar/tests/test_local.py | |
| mv .coverage build/.coverage.test_local.file | |
| pytest $PYTEST_CONFIG -k "vineyard" \ | |
| mars/tensor/datastore/tests/test_datastore_execution.py \ | |
| mars/dataframe/datastore/tests/test_datastore_execution.py | |
| mv .coverage build/.coverage.test_vineyard_op.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$WITH_RAY" ]; then | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s --ignore=mars/deploy/oscar/ -m ray | |
| coverage report | |
| fi | |
| if [ -n "$WITH_RAY_DEPLOY" ]; then | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray.py -m ray | |
| mv .coverage build/.coverage.test_ray.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_load_modules.py -m ray | |
| mv .coverage build/.coverage.test_ray_load_modules.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_cluster_standalone.py -m ray | |
| mv .coverage build/.coverage.test_ray_cluster_standalone.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_client.py -m ray | |
| mv .coverage build/.coverage.test_ray_client.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_fault_injection.py -m ray | |
| mv .coverage build/.coverage.test_ray_fault_injection.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_scheduling.py -m ray | |
| mv .coverage build/.coverage.test_ray_scheduling.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$WITH_RAY_DAG" ]; then | |
| export MARS_CI_BACKEND=ray | |
| export RAY_idle_worker_killing_time_threshold_ms=60000 | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/dataframe -v -s -m "not skip_ray_dag" --ignore=mars/dataframe/contrib/raydataset | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/dataframe/contrib/raydataset -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/tensor -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/learn --ignore mars/learn/contrib --ignore mars/learn/utils/tests/test_collect_ports.py -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s -m ray_dag | |
| mv .coverage build/.coverage.ray_dag.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag.py | |
| mv .coverage build/.coverage.test_ray_dag.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag_failover.py | |
| mv .coverage build/.coverage.test_ray_dag_failover.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag_oscar.py -m ray | |
| mv .coverage build/.coverage.test_ray_dag_oscar.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$RUN_DASK" ]; then | |
| pytest $PYTEST_CONFIG mars/contrib/dask/tests/test_dask.py | |
| coverage report | |
| fi | |
| coverage xml | |
| - name: Stop vineyard runtime | |
| if: ${{ matrix.with-vineyard }} | |
| shell: bash | |
| run: | | |
| sudo docker stop vineyard || true | |
| - name: Report coverage data | |
| shell: bash | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) |