Add support for {DataFrame,Series}.mode #6351
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Mars CI on Platforms | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| types: ['opened', 'reopened', 'synchronize'] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8-kubernetes, 3.8-ray, 3.8-ray-deploy, 3.8-ray-dag, 3.8-vineyard, 3.8-dask] | |
| include: | |
| - { os: ubuntu-latest, python-version: 3.8-kubernetes, no-common-tests: 1, | |
| no-deploy: 1, with-kubernetes: "with Kubernetes" } | |
| - { os: ubuntu-20.04, python-version: 3.8-hadoop, no-common-tests: 1, | |
| no-deploy: 1, with-hadoop: "with hadoop" } | |
| - { os: ubuntu-latest, python-version: 3.8-vineyard, no-common-tests: 1, | |
| no-deploy: 1, with-vineyard: "with vineyard" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray, no-common-tests: 1, | |
| no-deploy: 1, with-ray: "with ray" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray-deploy, no-common-tests: 1, | |
| no-deploy: 1, with-ray-deploy: "with ray deploy" } | |
| - { os: ubuntu-latest, python-version: 3.8-ray-dag, no-common-tests: 1, | |
| no-deploy: 1, with-ray-dag: "with ray dag" } | |
| - { os: ubuntu-latest, python-version: 3.8-dask, no-common-tests: 1, | |
| no-deploy: 1, run-dask: "run dask" } | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up conda ${{ matrix.python-version }} | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| shell: bash | |
| run: | | |
| source ./ci/install-conda.sh | |
| python -m pip install --upgrade pip setuptools wheel coverage | |
| - name: Start minikube | |
| if: ${{ matrix.with-kubernetes }} | |
| uses: medyagh/setup-minikube@master | |
| with: | |
| driver: docker | |
| mount-path: '/home/runner:/home/runner' | |
| - name: Install dependencies | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| WITH_VINEYARD: ${{ matrix.with-vineyard }} | |
| WITH_RAY: ${{ matrix.with-ray }} | |
| WITH_RAY_DEPLOY: ${{ matrix.with-ray-deploy }} | |
| WITH_RAY_DAG: ${{ matrix.with-ray-dag }} | |
| RUN_DASK: ${{ matrix.run-dask }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| export DEFAULT_VENV=$VIRTUAL_ENV | |
| source ./ci/rewrite-cov-config.sh | |
| pip install numpy scipy cython | |
| pip install -e ".[dev,extra]" | |
| if [[ $UNAME == "windows" ]]; then | |
| pip install virtualenv flaky | |
| else | |
| pip install virtualenv flaky | |
| if [ -n "$WITH_KUBERNETES" ]; then | |
| pip install kubernetes "pandas<1.5.0" | |
| kubectl get pods -A | |
| fi | |
| if [ -n "$WITH_HADOOP" ]; then | |
| ./ci/install-hadoop.sh | |
| echo "import coverage; coverage.process_startup()" > \ | |
| $(python -c "import site; print(site.getsitepackages()[-1])")/coverage.pth | |
| conda install -n test --quiet --yes -c conda-forge python=$PYTHON skein libffi conda-pack | |
| fi | |
| if [ -n "$WITH_VINEYARD" ]; then | |
| pip install vineyard -i https://pypi.org/simple | |
| mkdir -p /tmp/etcd-download-test | |
| export ETCD_VER=v3.4.13 | |
| export ETCD_DOWNLOAD_URL=https://github.com/etcd-io/etcd/releases/download | |
| curl -L $ETCD_DOWNLOAD_URL/$ETCD_VER/etcd-$ETCD_VER-linux-amd64.tar.gz -o /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz | |
| tar xzvf /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz -C /tmp/etcd-download-test --strip-components=1 | |
| sudo mv /tmp/etcd-download-test/etcd /usr/local/bin/ | |
| sudo mv /tmp/etcd-download-test/etcdctl /usr/local/bin/ | |
| rm -fr /tmp/etcd-$ETCD_VER-linux-amd64.tar.gz /tmp/etcd-download-test | |
| fi | |
| if [ -n "$WITH_RAY" ] || [ -n "$WITH_RAY_DAG" ] || [ -n "$WITH_RAY_DEPLOY" ]; then | |
| pip install "ray>=1.8.0,<2.4.0" | |
| pip install "xgboost_ray<0.1.14" "protobuf<4" | |
| # Ray Datasets need pyarrow>=6.0.1 | |
| pip install "pyarrow>=6.0.1" | |
| pip install lightgbm | |
| fi | |
| if [ -n "$RUN_DASK" ]; then | |
| pip install "dask[complete]" "mimesis<9.0.0" scikit-learn | |
| fi | |
| fi | |
| conda list -n test | |
| - name: Test with pytest | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| WITH_CYTHON: ${{ matrix.with-cython }} | |
| WITH_VINEYARD: ${{ matrix.with-vineyard }} | |
| WITH_RAY: ${{ matrix.with-ray }} | |
| WITH_RAY_DEPLOY: ${{ matrix.with-ray-deploy }} | |
| WITH_RAY_DAG: ${{ matrix.with-ray-dag }} | |
| RUN_DASK: ${{ matrix.run-dask }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| NUMPY_EXPERIMENTAL_ARRAY_FUNCTION: 1 | |
| USE_MINIKUBE_DOCKER_ENV: true | |
| CHANGE_MINIKUBE_NONE_USER: true | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| if [ -n "$WITH_HADOOP" ]; then | |
| source $CONDA/bin/activate test | |
| source ./ci/reload-env.sh | |
| pytest $PYTEST_CONFIG -m hadoop | |
| coverage report | |
| fi | |
| if [ -n "$WITH_KUBERNETES" ]; then | |
| pytest $PYTEST_CONFIG --forked mars/deploy/kubernetes | |
| coverage report | |
| fi | |
| if [ -n "$WITH_VINEYARD" ]; then | |
| pytest $PYTEST_CONFIG mars/storage/tests/test_libs.py | |
| mv .coverage build/.coverage.test_lib.file | |
| pytest $PYTEST_CONFIG mars/deploy/oscar/tests/test_local.py | |
| mv .coverage build/.coverage.test_local.file | |
| pytest $PYTEST_CONFIG -k "vineyard" \ | |
| mars/tensor/datastore/tests/test_datastore_execution.py \ | |
| mars/dataframe/datastore/tests/test_datastore_execution.py | |
| mv .coverage build/.coverage.test_vineyard_op.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$WITH_RAY" ]; then | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s --ignore=mars/deploy/oscar/ -m ray | |
| coverage report | |
| fi | |
| if [ -n "$WITH_RAY_DEPLOY" ]; then | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray.py -m ray | |
| mv .coverage build/.coverage.test_ray.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_load_modules.py -m ray | |
| mv .coverage build/.coverage.test_ray_load_modules.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_cluster_standalone.py -m ray | |
| mv .coverage build/.coverage.test_ray_cluster_standalone.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_client.py -m ray | |
| mv .coverage build/.coverage.test_ray_client.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_fault_injection.py -m ray | |
| mv .coverage build/.coverage.test_ray_fault_injection.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_scheduling.py -m ray | |
| mv .coverage build/.coverage.test_ray_scheduling.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$WITH_RAY_DAG" ]; then | |
| export MARS_CI_BACKEND=ray | |
| export RAY_idle_worker_killing_time_threshold_ms=60000 | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/dataframe -v -s -m "not skip_ray_dag" --ignore=mars/dataframe/contrib/raydataset | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/dataframe/contrib/raydataset -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/tensor -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=500 mars/learn --ignore mars/learn/contrib --ignore mars/learn/utils/tests/test_collect_ports.py -v -s -m "not skip_ray_dag" | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s -m ray_dag | |
| mv .coverage build/.coverage.ray_dag.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag.py | |
| mv .coverage build/.coverage.test_ray_dag.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag_failover.py | |
| mv .coverage build/.coverage.test_ray_dag_failover.file | |
| pytest $PYTEST_CONFIG --durations=0 --timeout=200 -v -s mars/deploy/oscar/tests/test_ray_dag_oscar.py -m ray | |
| mv .coverage build/.coverage.test_ray_dag_oscar.file | |
| coverage combine build/ && coverage report | |
| fi | |
| if [ -n "$RUN_DASK" ]; then | |
| pytest $PYTEST_CONFIG mars/contrib/dask/tests/test_dask.py | |
| coverage report | |
| fi | |
| coverage xml | |
| - name: Stop vineyard runtime | |
| if: ${{ matrix.with-vineyard }} | |
| shell: bash | |
| run: | | |
| sudo docker stop vineyard || true | |
| - name: Report coverage data | |
| shell: bash | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) |