Fix test failures #6354
Workflow file for this run
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| name: Mars CI Core | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| pull_request: | |
| types: ['opened', 'reopened', 'synchronize'] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.7, 3.8, 3.9, 3.9-cython] | |
| include: | |
| - { os: ubuntu-latest, python-version: 3.9-cython, no-common-tests: 1, | |
| no-deploy: 1, with-cython: 1 } | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 2 | |
| - name: Set up conda ${{ matrix.python-version }} | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| shell: bash | |
| run: | | |
| source ./ci/install-conda.sh | |
| python -m pip install --upgrade pip setuptools wheel coverage; | |
| - name: Install dependencies | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| WITH_CYTHON: ${{ matrix.with-cython }} | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| export DEFAULT_VENV=$VIRTUAL_ENV | |
| if [[ ! "$PYTHON" =~ "3.6" ]]; then | |
| conda install -n test --quiet --yes -c conda-forge python=$PYTHON numba | |
| fi | |
| # todo remove this when fastparquet release new version | |
| if [[ "$PYTHON" =~ "3.6" ]]; then | |
| pip install numpy\<1.20.0 | |
| fi | |
| source ./ci/rewrite-cov-config.sh | |
| pip install numpy scipy cython oss2 | |
| pip install -e ".[dev,extra]" | |
| pip install virtualenv flaky | |
| if [ -z "$NO_COMMON_TESTS" ]; then | |
| if [[ ! "$PYTHON" =~ "3.6" ]] && [[ ! "$PYTHON" =~ "3.9" ]]; then | |
| pip install h5py zarr matplotlib prometheus-client requests | |
| conda install -n test --quiet --yes -c conda-forge python=$PYTHON \ | |
| "tiledb-py>=0.4.3,<0.6.0" "tiledb<2.0.0" || true | |
| fi | |
| conda install -n test --quiet --yes -c pkgs/main python=$PYTHON certifi | |
| fi | |
| conda list -n test | |
| - name: Test with pytest | |
| env: | |
| WITH_HADOOP: ${{ matrix.with-hadoop }} | |
| WITH_KUBERNETES: ${{ matrix.with-kubernetes }} | |
| WITH_CYTHON: ${{ matrix.with-cython }} | |
| NO_COMMON_TESTS: ${{ matrix.no-common-tests }} | |
| NUMPY_EXPERIMENTAL_ARRAY_FUNCTION: 1 | |
| CHANGE_MINIKUBE_NONE_USER: true | |
| shell: bash | |
| run: | | |
| source ./ci/reload-env.sh | |
| source ./ci/run-tests.sh | |
| coverage xml | |
| - name: Report coverage data | |
| shell: bash | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) |