1.2.0

What's Changed

• Refactored in separate branch for League of Robots clusters by @pneerincx in #22
• For lo r clusters by @pneerincx in #23
• For lo r clusters by @Gerbenvandervries in #24
• Bugfixes and updated EasyBuild by @pneerincx in #25
• Fix for when users explicitly source their environment. by @pneerincx in #26
• Updates for For_LoR_clusters branch. by @pneerincx in #27
• Updated for deployment of various NGS related tools bundled in NGS_Suite/2019.08.1-foss-2018b. by @pneerincx in #29
• Bugfix for RPlus EasyConfig and new version of depad-utils. by @pneerincx in #34
• Bugfix: do not enforce checksums when running EasyBuild bootstrap script by @pneerincx in #36
• Various updates for the "for-LoR_clusters" branch. by @pneerincx in #37
• Updates for new EasyBuild 4.x by @pneerincx in #38
• Update to new synchronize task from ansible.posix collection. by @pneerincx in #39
• Updated to new EB version and new version of extra EB easyconfigs and new cluster-utils. by @pneerincx in #40
• For LoR clusters update by @pneerincx in #41
• Updates for League of Robots. by @pneerincx in #42
• Updated configs for zincfinger and leucinezipper clusters. Added config for new wingedhelix cluster. by @pneerincx in #43
• Added CircleCI config. by @pneerincx in #44
• Fixed merge conflicts by @pneerincx in #46
• The big one... by @pneerincx in #45
• Updated Circle CI config by @pneerincx in #47
• added liftover chain file by @RoanKanninga in #48
• Spider added by @scimerman in #49
• Feature/cronjobs by @pneerincx in #50
• updated group_vars for winged helix + added .vault to the gitignore list by @RoanKanninga in #51
• Updates for deploying cronjobs on Zinc-Finger (WIP) by @pneerincx in #52
• Feature: cronjobs for Leucine-Zipper (and some small fixes). by @pneerincx in #54
• Re-enable cronjobs for fetching data from gattaca02 on Zinc-Finger. by @pneerincx in #53
• Updated documentation and added pre_deploy_checks to all single_role_playbooks. by @pneerincx in #55
• Updated versions for new pipelines for the test_groups of zinc-finger by @BenjaminsM in #56
• Feature: install only required easyconfigs on helper machines by @pneerincx in #57
• updated checksum for easybuild release 2.8.51 by @BenjaminsM in #58
• Updated NGS_Automated for umcg-gap group 3.6.2 (wrong) -> 3.6.3 (correct). by @pneerincx in #59
• Updated extra_easyconfigs_version -> 2.8.52 for additional missing NGS_Automated/GAP bundle. by @pneerincx in #60
• Added missing cronjobs. by @pneerincx in #61
• Fix/various by @pneerincx in #62
• Disabled cronjobs to fetch GS data on Leucine-Zipper and Winge-Helix. by @pneerincx in #63
• Added EASYBUILD_GROUP_WRITABLE_INSTALLDIR to modules.bashrc template. by @pneerincx in #65
• updates for fix NGS_Automated 3.8.0 by @BenjaminsM in #64
• Create EB logs in a path that starts with ${HPC_ENV_PREFIX} by @pneerincx in #66
• Use copyRawDataToPrm.sh only on Leucine-Zipper to process all inhouse generated NGS data. by @pneerincx in #67
• Added cronjobs for gattaca servers. by @pneerincx in #68
• Updates for deploying cron jobs on GD machines by @pneerincx in #69
• WH: chaperone by @scimerman in #70
• Ansible pipelines deployed on wh-chaperone by @scimerman in #71
• merged gattaca cronjobs into wingedhelix vars.yml by @RoanKanninga in #72
• Small fix and ditto update by @pneerincx in #73
• disabled all cronjobs for production groups by @RoanKanninga in #74
• Refactored inventory handling. by @pneerincx in #75
• disabled cronjobs for umcg-labgnkbh and patho group by @RoanKanninga in #76
• added missing pipelines by @RoanKanninga in #77
• added missing subdirectories of concordance folder by @RoanKanninga in #78
• Deleted outdated inventory.ini and inventory.py, which are no longer used. by @pneerincx in #79
• Betabarrel: dai machine renamed by @scimerman in #80
• Updated EasyBuild and some modules on Gearshift. by @pneerincx in #81
• Fixes and EasyBuild upgrade. by @pneerincx in #82
• Copperfist deployment by @scimerman in #83
• Nibbler by @scimerman in #84
• Updated easyconfigs and implemented takeiteasy by @scimerman in #85
• Temporarily disabled ssh_args for synchronize tasks as it is broken in Mitogen 0.3.3. by @pneerincx in #86
• Fix/extra easyconfigs prefix by @pneerincx in #87
• Updated Nibbler group_vars for today's test deployment. by @pneerincx in #88
• updated version for reference download (smaller size) for hyperchicken by @RoanKanninga in #89
• Chaperones edited by @scimerman in #91
• Ansible-lint changes by @scimerman in #92
• Improved configs by @pneerincx in #90
• Fix/various by @pneerincx in #93
• Fix/pre deploy checks by @pneerincx in #95
• Small updates by @pneerincx in #97
• updated static_inventories + WIP group_vars for wingedhelix and betab… by @RoanKanninga in #94
• Feature/manage notifications by @pneerincx in #98
• Mail2teamschannel by @pneerincx in #99
• Updated EasyBuild. by @pneerincx in #100
• Added ${APPTAINER_BINDPATH} to modules.bashrc by @pneerincx in #101
• depad-utils update by @scimerman in #103
• Updated notification settings. by @pneerincx in #102
• removed unknown argument in startDragenPipeline cronjob by @RoanKanninga in #104
• Bugfix: user on dat must be *-dm instead of *-ateambot. by @pneerincx in #105
• Updated README.md for new GD infra. by @pneerincx in #106
• enabled production group cronjobs by @RoanKanninga in #107
• Bugfix for wrong group. by @pneerincx in #108
• fix cronjobs by @RoanKanninga in #109
• Update/easybuild by @pneerincx in #110
• Updated: depad- and cluster-utils by @scimerman in #112
• Bugfix for copyRawDataToPrm cronjobs for the umcg-labgnkbh group. by @pneerincx in #111
• activate crons by @Gerbenvandervries in #113
• Dynamic script moved to all/vars.yml is now removed from WH, BB, CF by @scimerman in #114
• Fixed linter issues and typo. by @pneerincx in #115
• Added configs for new umcg-pr group. by @pneerincx in #116
• HC update by @scimerman in #118
• take-it-easyconfigs 23.10.xx versions by @RoanKanninga in #117
• updated version of the NGS_Demultiplexing for the atd user in the var… by @kdelange in #119
• updated take-it-easyconfigs version by @kdelange in #120
• Vaxtron by @pneerincx in #121
• Updated cluster-utils on Vaxtron. by @pneerincx in #122
• Bugfixes. by @pneerincx in #123
• soft_partition: configured sequencers folder ownership and permissions by @scimerman in #124
• Updated settings for WH by @scimerman in #126
• Webslag - for testing - will be improved later by @scimerman in #127
• Webslag by @scimerman in #128
• updated pipeline/cronjob for new releases on copperfist and betabarrel by @RoanKanninga in #125
• Updated list of software deployed on Vaxtron. by @pneerincx in #129
• Added functionality to install standard easyconfigs in addition to custom ones. by @pneerincx in #130
• Added additional modules to Vaxtron. by @pneerincx in #131
• prepared for new NGS_Automated-4.2.0 release by @RoanKanninga in #132
• Added Lmod module load hook to track module usage using syslog. by @pneerincx in #133
• Spring updates by @pneerincx in #134
• Update utils v24.04.1 by @pneerincx in #135
• disable trendanalysis cronjobs on bb. by @Gerbenvandervries in #138
• updates by @RoanKanninga in #136

New Contributors

• @scimerman made their first contribution in #49
• @BenjaminsM made their first contribution in #56
• @kdelange made their first contribution in #119

Full Changelog: 1.1.0...1.2.0