fixing header

molgenis · Apr 7, 2016 · 8ceabc9 · 8ceabc9
1 parent 639d434
commit 8ceabc9
Showing 1 changed file with 6 additions and 3 deletions.
diff --git a/molgenis-compute-core/src/main/resources/templates/slurm/header_gaf.ftl b/molgenis-compute-core/src/main/resources/templates/slurm/header_gaf.ftl
@@ -17,9 +17,12 @@ set -u
 function errorExitandCleanUp()
 {
         echo "TRAPPED"
-	printf "${taskId}\n" > /groups/umcg-gaf/tmp05/logs/${project}.failed
-	tail -50 ${taskId}.err >> /groups/umcg-gaf/tmp05/logs/${project}.failed
-	rm /groups/umcg-gaf/tmp05/tmp/${project}/*/tmp_${taskId}*
+	printf "${taskId}\n" > /groups/umcg-gaf/${tmpName}/logs/${project}.failed
+	if [ -f ${taskId}.err ]
+	then
+		tail -50 ${taskId}.err >> /groups/umcg-gaf/${tmpName}/logs/${project}.failed
+	fi
+	rm -rf /groups/umcg-gaf/${tmpName}/tmp/${project}/*/tmp_${taskId}*
 }
 
 declare MC_tmpFolder="tmpFolder"