MOLGENIS Compute v1.4 (20.03.1)

tiny bugfix in the slurm submit.ftl

MOLGENIS Compute v1.4 (19.01.1)

Configure walltime, memory, nodes, ppn, queue per protocol

MOLGENIS Compute v1.4 (17.08.1)

• Updated templates for local backend
• Updated templates for slurm backend
• Refactored tests to produce output in a test specific subdir (as opposed to overwriting the results with each test.)
• Exit with error when batching is requested as this feature is currently not working pending re-implementation.

MOLGENIS Compute v1.4 (16.11.1)

• Minor bug fix for SLURM header.ftl template.
• Updated pom.xml and assembly.xml to create tar.gz instead of zip artifact.

MOLGENIS Compute v1.4 (16.08.1)

• Updated SLURM job header, job footer and submit templates for cluster setup with Quality of Service (QoS)
• Removed custom *_gaf templates, which have been relocated to the respective pipeline repos.

MOLGENIS Compute v1.4 (16.07.1)

added function that will calculate the duration of each job and put it in a file (in the jobs directory)

MOLGENIS Compute v1.4 (16.05.1)

• updated header_gaf.ftl
• added footer_gaf.ftl
• updated submit_gaf.ftl

Prepared for Error logging (mailing)

MOLGENIS Compute v1.4 (16.04.1)

• updated header and submit for slurm (-gaf)

MOLGENIS Compute v1.4.0-BETA (15.12.4)

Features

• Further memory reduction by smart handling of all the parameters stored in the environment

Bugfixes

Fix #236 The environment string is placed into memory before writing it to files. This causes out of memory errors with large sample sizes

MOLGENIS Compute v1.3 (15.12.3)

Features

• GoldmanSachs Map and intern Strings for efficient memory usage
• Massive Speed improvements by refactoring code
• Enhanced logging, telling more by telling less

Changes

• The batching feature has been disabled for now, due to implementation issues
• The generated dist zip now contains a folder with the following name: molgenis-compute-version. This means you no longer have to change the name, only renaming the zip file should work now