WIP: draft for mvs support (unfinished)

.gitignore

@@ -1,4 +1,6 @@
 ### Custom
+working_folder/*
+preprocessor/cellstar_preprocessor/tools/open_wrl_file/*
 molstar-extension/site/*
 molstar-extension/node_modules/
 molstar-extension/debug.log
@@ -317,3 +319,4 @@ dmypy.json
 # Cython debug symbols
 cython_debug/
 
+working_folder/custom-actin/.zattrs

db/cellstar_db/models.py

@@ -588,3 +588,13 @@ def detail_lvl_to_fraction(self) -> dict:
         mesh simplification ratios (fractions, e.g. 0.8) as values
         """
         ...
+
+
+class ModelArbitraryTypes(BaseModel):
+    class Config:
+        arbitrary_types_allowed = True
+
+
+class Asset(ModelArbitraryTypes):
+    filename: str
+    data: str | bytes

environment.yaml

@@ -41,7 +41,7 @@ dependencies:
     - sfftk==0.5.5.dev1
     - sfftk-rw==0.7.1
     - SimpleParse @ git+https://github.com/mcfletch/simpleparse.git@57c8d734bdc165581fbacfeecabe25a66c3452a4
-    - tensorstore==0.1.18
+    - tensorstore
     - killport
     - Pillow
     - typer==0.7.0

preprocessor/cellstar_preprocessor/tools/write_in_memory_zip/write_in_memory_zip.py

@@ -0,0 +1,20 @@
+import io
+from pathlib import Path
+import zipfile
+
+from cellstar_db.models import Asset
+
+def write_in_memory_zip(output_path: Path, assets: list[Asset]):
+    zip_buffer = io.BytesIO()
+
+
+    with zipfile.ZipFile(zip_buffer, "a", zipfile.ZIP_DEFLATED, False) as zip_file:
+        # for file_name, data in [('1.txt', io.BytesIO(b'111')),
+        #                         ('2.txt', io.BytesIO(b'222'))]:
+        for item in assets:
+            # zip_file.writestr(item.filename, data.getvalue())
+            zip_file.writestr(item.filename, item.data)
+
+    with open(str(output_path.resolve()), 'wb') as f:
+        f.write(zip_buffer.getvalue())
+

vs_toolkit/extra_models.py

@@ -0,0 +1,4 @@
+import molviewspec
+
+class MVSJ:
+    pass