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Correcting some issues with vivax liver stage prophylaxis. #354

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  1. ls_drug and ls_drug_time are now added to the variable list.
  2. liver stage drug was not differentiated from blood stage drug, so there was some confusion in subsetting and outputs in calculate_successful_treatments function.

@RJSheppard RJSheppard requested a review from pwinskill March 19, 2025 16:21
1. ls_drug and ls_drug_time are now added to the variable list.
2. ls drug was not differentiated from bs drug, so there was some confusion in subsetting and outputs in calculate_successful_treatments function.
@RJSheppard RJSheppard force-pushed the vivax_treatment_prophylaxis_fix branch from d4138d9 to 57bba5e Compare March 24, 2025 12:14
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Looks good Richard, thanks for responding to this

@@ -338,7 +338,9 @@ create_variables <- function(parameters) {
last_boosted_iaa = last_boosted_iaa,
iaa = iaa,
iam = iam,
hypnozoites = hypnozoites
hypnozoites = hypnozoites,
ls_drug = ls_drug,
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Just a note that in the description (lines 38 and 39) it would be worth stating that these a "liver-stage"

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