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[WIP] Tpt2.8: same commits as before but ontop of the newest master. #429

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[WIP] Tpt2.8: same commits as before but ontop of the newest master. #429

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18567d7
initial addition for finding paths differently...
schwancr Nov 8, 2013
5d7df7d
added new code to do path finding in tpt.py This algorithm is what @b…
schwancr Nov 16, 2013
d607ca5
updated print statements when finding paths.
schwancr Nov 21, 2013
5da9f37
started adding a new tpt test
schwancr Nov 22, 2013
f1930ab
moved stuff in tpt.py around and added citations
schwancr Dec 5, 2013
089bc9f
added a new test for the new path finding code, but commented out the…
schwancr Dec 5, 2013
f598f30
regenerated FindPaths reference with the new code. I think this is ok…
schwancr Dec 6, 2013
1173269
forgot to add the new tpt reference folder for the FindPaths.py test
schwancr Dec 6, 2013
1974733
started adding scipy tpt
schwancr Feb 11, 2014
aec7f38
small changes FindPaths.py and indentation fixes in tpt.py
schwancr Jul 8, 2014
1ea2b96
got stuff running. fixed print statements
schwancr Jul 8, 2014
9a2ee84
stuff from quite a while ago...
schwancr Oct 17, 2014
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313 changes: 292 additions & 21 deletions MSMBuilder/tpt.py
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1 change: 1 addition & 0 deletions reference/tpt/F.dat
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1 change: 1 addition & 0 deletions reference/tpt/U.dat
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