Skip to content

Issues: nanoporetech/bonito

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

19 Open 324 Closed
19 Open 324 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Bonito with different torch version
#403 opened Nov 29, 2024 by NLKaiser
Merging data from several basecaller runs
#402 opened Nov 7, 2024 by dylanlawrencebio
NCM_2024 New models
#400 opened Sep 20, 2024 by wangziyuan66
Is it possible to use a Bonito trained or fine-tuned model with dorado duplex basecalling.
#395 opened Jun 17, 2024 by mark-sor2
[Errno 2] No such file or directory: '/data/training/ctc-data/dataset.py'
#391 opened Jun 4, 2024 by baronfairy
2
Chunks.npy and Dataset.py not being generated
#385 opened Apr 1, 2024 by Sgreenfield9
3
Feature request: export the list of reads used to train a model
#382 opened Feb 19, 2024 by andreaswallberg
RNA004 Does not output any CTC data question Further information is requested
#379 opened Feb 5, 2024 by VBHarrisN
@iiSeymour
3
Short basecalled R9.4.1 reads using both trained and default models in bonito, but not in guppy
#376 opened Dec 20, 2023 by andreaswallberg
1
bonito basecall model refinement preprocessing memory issues
#361 opened Aug 28, 2023 by CodingKaiser
1
How to train my data
#357 opened Aug 1, 2023 by xysgxbns
Mean QScore calculation can be much quicker.
#336 opened Mar 24, 2023 by rhpvorderman
> no suitable ctc data to write when basecalling with save-ctc flag
#308 opened Oct 1, 2022 by HanielF
3
"dataset.py" in bonito train
#298 opened Aug 10, 2022 by wangziyuan66
Trimming CTC data
#253 opened May 7, 2022 by mbhall88
3
Wiki on experimental strategies for training models with extended alphabet
#242 opened Mar 18, 2022 by Kirk3gaard
2
Feature request: pass custom settings to mappy/minimap enhancement New feature or request
#212 opened Dec 13, 2021 by billytcl
1
Lowered barcode recognition of bonito basecalled data with Bonito 0.4.0
#176 opened Aug 30, 2021 by menickname
@iiSeymour
9
Barcoding and training
#141 opened Apr 2, 2021 by tnn111
2
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.