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v2.1.0
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@marcus1487 marcus1487 released this 03 May 19:10
· 174 commits to master since this release
v2.1.0
3780c94

This version adds several new features as well as general bug fixes and optimizations.

Major features:

  • Raw signal plotting allows users to visualize raw Nanopore signal aligned to a reference
    • In addition, the Remora API supports efficient and easy-to-use access to pre-read per-site signal based statistics (such as notebooks in repository).
    • Allows users to explore modified bases in signal space to gain intuition for modified base model training.
    • This replaces the Tombo signal visualization and metrics extraction features.
  • Infer performance optimization and bug fix on certain systems
    • Note that Dorado is still preferred as the production modified basecalling platform, but these improvements allow users to perform modified basecalling after canonical basecalling more efficiently.
  • Initial RNA Support
    • Support 3' to 5' signal in Remora datasets and models
  • Various training improvements
    • Batch balancing
    • Dynamic training data filtering
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