HARMONY-864: Begin updates to README run commands

README.md

@@ -41,7 +41,7 @@ and update the `.env` with the correct values.
 
 #### Python & Project Dependencies (Optional)
 
-If you would like to do local development outside of Docker, install Python (3.7.4), and create a Python virtual environment.
+If you would like to do local development outside of Docker, install Python (3.9), and create a Python virtual environment.
 
 Install project dependencies:
 
@@ -52,7 +52,7 @@ Install project dependencies:
 
 If you'd rather not build the image locally (as instructed below), you can simply pull the latest image: 
 
-    $ docker pull harmonyservices/netcdf-to-zarr
+    $ docker pull ghcr.io/nasa/harmony-netcdf-to-zarr
 
 Some of the [Makefile](./Makefile) targets referenced below include an optional argument that allows us to use a local copy of 
 `harmony-service-lib-py` (which is useful for concurrent development): 

bin/run-in-docker

@@ -23,13 +23,13 @@ if [ -f .env ]; then
   args="$args --env-file=.env"
 fi
 
-cmd="python3 -m harmony_netcdf_to_zarr --harmony-action invoke --harmony-input '$($scriptdir/replace.sh $@)'"
+cmd="FALLBACK_AUTHN_ENABLED=true python3 -m harmony_netcdf_to_zarr --harmony-action invoke --harmony-metadata-dir example --harmony-sources example/catalog0.json --harmony-input '$($scriptdir/replace.sh $@)'"
 
 if [[ ! -z "${LOCAL_SVCLIB_DIR}" ]]
 then
   LOCAL_SVCLIB_DIR=$(readpath $LOCAL_SVCLIB_DIR)
   svclib_volume="-v ${LOCAL_SVCLIB_DIR}:/opt/harmony-service-lib-py"
-  cmd="pip install --user -e /opt/harmony-service-lib-py && python3 -m harmony_netcdf_to_zarr --harmony-action invoke --harmony-input '$($scriptdir/replace.sh $@)'"
+  cmd="pip install --user -e /opt/harmony-service-lib-py && FALLBACK_AUTHN_ENABLED=true python3 -m harmony_netcdf_to_zarr --harmony-action invoke --harmony-metadata-dir example --harmony-sources example/catalog0.json --harmony-input '$($scriptdir/replace.sh $@)'"
 fi
 
 docker run --rm -it \

example/catalog0.json

@@ -0,0 +1,18 @@
+{
+  "stac_version": "1.0.0-beta.2",
+  "stac_extensions": [],
+  "id": "3f6ceb37-0d8e-4f3c-91bc-79fdca9c4bbf",
+  "links": [
+    {
+      "rel": "harmony_source",
+      "href": "https://cmr.uat.earthdata.nasa.gov/search/concepts/C1233860183-EEDTEST"
+    },
+    {
+      "rel": "item",
+      "href": "./granule_G1233860471-EEDTEST_0000000.json",
+      "type": "application/json",
+      "title": "000_00_000_africa"
+    }
+  ],
+  "description": "CMR collection C1233860183-EEDTEST, granule G1233860471-EEDTEST"
+}

example/dotenv

@@ -22,6 +22,7 @@ USE_LOCALSTACK=true
 SHARED_SECRET_KEY=_THIS_IS_MY_32_CHARS_SECRET_KEY_
 
 # Set to 'true' if running Docker in Docker and the docker daemon is somewhere other than the current context
+# Leave blank, i.e. DIND= if not running Docker in Docker
 DIND=true
 
 # Indicates where docker commands should find the docker daemon

example/granule_G1233860471-EEDTEST_0000000.json

@@ -0,0 +1,55 @@
+{
+  "stac_version": "1.0.0-beta.2",
+  "stac_extensions": [],
+  "id": "8572fdd0-071e-4a23-b703-14e8aa154ee6",
+  "type": "Feature",
+  "links": [],
+  "properties": {
+    "start_datetime": "2019-12-31T00:00:00.000Z",
+    "end_datetime": "2019-12-31T07:59:59.000Z",
+    "datetime": "2019-12-31T00:00:00.000Z"
+  },
+  "bbox": [
+    -30.356735,
+    -41.67082,
+    67.09637,
+    47.372707
+  ],
+  "geometry": {
+    "type": "Polygon",
+    "coordinates": [
+      [
+        [
+          -30.356735,
+          -41.67082
+        ],
+        [
+          -30.356735,
+          47.372707
+        ],
+        [
+          67.09637,
+          47.372707
+        ],
+        [
+          67.09637,
+          -41.67082
+        ],
+        [
+          -30.356735,
+          -41.67082
+        ]
+      ]
+    ]
+  },
+  "assets": {
+    "data": {
+      "href": "https://harmony.uat.earthdata.nasa.gov/service-results/harmony-uat-eedtest-data/C1233860183-EEDTEST/nc/000_00_000_africa.nc",
+      "title": "000_00_000_africa.nc",
+      "type": "application/x-netcdf",
+      "roles": [
+        "data"
+      ]
+    }
+  }
+}

example/harmony-operation.json

@@ -1,5 +1,6 @@
 {
   "user": "jdoe",
+  "format": {"mime": "application/x-zarr"},
   "callback": "http://localhost/some-path",
   "stagingLocation": "s3://${STAGING_BUCKET}/public/harmony/netcdf-to-zarr/example-uuid/",
   "sources": [

harmony_netcdf_to_zarr/__main__.py

@@ -8,7 +8,7 @@
 
 import sys
 
-if sys.version_info[0] != 3 or sys.version_info[1] < 6:
+if sys.version_info[0] != 3 or sys.version_info[1] < 9:
     raise Exception('You must use Python 3.6 or later')
 
 import argparse