coconatfly 0.2.3

• empty query fixes for all keys and banc metadata by @jefferis in #34
• Fix malecns class in cf_partners() by @jefferis in #35
• also support for rootSide in malecns in #35

Full Changelog: v0.2.2...v0.2.3

coconatfly v0.2.2

• support malecns superclass/class/subclass change. To stay backward compatible
  for the time being the class hierarchy is mapped onto
  • class
  • subclass
  • subsubclass
    but the intent is to switch to superclass/class/subclass in the next version
    by @jefferis in #32
• Correct handling of malecns lineage information by @jefferis in #33
• cf_cosine_plot() now fetches all metadata cols by default (f1667a3)
• fix: pass on keep.all when cf_meta() receives keys
• cf_cosine_plot(): Now reports % of partner connections kept across datasets.

Full Changelog: v0.2.1...v0.2.2

coconatfly v0.2.1

• cf_meta() gets a MoreArgs argument to pass on to subsidiary functions for
  each dataset
• Using this cf_cosine_plot() and friends now prefer malecns foreign types
  (flywireType, mancType) when available and co-clustering with another dataset
  by @jefferis in #27
• cf_meta(): new keep.all argument keep all columns, not just shared columns
  by @jefferis in #30
• support for min_datasets in cosine clustering
  by @jefferis in #31

Full Changelog: v0.2.0...v0.2.1

coconatfly v0.2.0

Although coconatfly has been in use for some time, this is the first stable
release. It corresponds to what was used in the recent publication:

Schlegel, P., Yin, Y., Bates, A.S. et al.
Whole-brain annotation and multi-connectome cell typing of Drosophila.
Nature 634, 139–152 (2024). https://doi.org/10.1038/s41586-024-07686-5

The release is motivated in part because of some forthcoming changes that will
slightly alter some core functionality of the package.

What's Changed

• Minimal support for FANC clustering by @jefferis in #1
• Feature/flywire examples by @jefferis in #5
• First version cf_partner_summary by @jefferis in #7
• malevnc_meta -> manc_meta by @jefferis in #10
• fix handling of manc partners by @jefferis in #11
• Update test-triple.R by @jefferis in #12
• Support for the upcoming optic lobe release by @jefferis in #14
• Allow messier input keys by @jefferis in #15
• cf_partner summary enh by @jefferis in #16
• flywire/fanc use different threshold definition by @jefferis in #17
• Add connectivity and basic metadata support for banc by @jefferis in #19
• Feature/fanc meta by @jefferis in #21
• Fix/banc optic meta by @jefferis in #25
• Feature/cosine plot warn on drop by @jefferis in #26

Full Changelog: https://github.com/natverse/coconatfly/commits/v0.2.0