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update changelog
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schlegelp committed Aug 18, 2024
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* - Version
- Date
-
* - 1.7.0
- 25/07/24
- - BREAKING:
- plotting functions: dropped the ``cluster`` parameter in favour of an improved ``color_by`` logic (see below)
- Additions:
- ``navis`` now uses `navis-fastcore <https://github.com/schlegelp/fastcore-rs/tree/main/py>`
if present to dramatically speed up core functions (see updated install instructions)
- new method :meth:`navis.NeuronList.add_metadata` to quickly add metadata to neurons
- Improvements:
- :func:`navis.find_soma` and :func:`navis.graph.neuron2nx` (used under the hood) are now much faster
- all I/O functions such as :func:`navis.read_swc` now show which file caused an error (if any); original
filenames are tracked as ``file`` property
- :class:`navis.NeuronList` will only search the first 100 neurons for autocompletion to avoid freezing with
large lists
- plotting functions: `color_by` now accepts either a list of labels (one per neuron) or the name of a neuron property
- :func:`navis.subset_neuron` is now faster and more memory efficient when subsetting meshes
- :meth:`navis.TreeNeuron.cable_length` is now faster
- Fixes:
- all I/O functions such as :func:`navis.read_swc` now ignore hidden files (filename starts with `._`)
- :func:`navis.read_swc` now actually uses the soma label (if present) to set the soma node
- fixed a bug in plotting when using vertex colors
- fixed the progress bar in :func:`navis.interfaces.neuprint.fetch_mesh_neuron`
- fixed a bug in :func:`navis.synblast` that caused multiprocessing to fail (pickling issue with `pykdtree`)
- :func:`navis.interfaces.neuprint.fetch_mesh_neuron` will now ignore the `lod` parameter if the data source does not
support it instead of breaking
- fixed a number of depcrecation warnings in the codebase
* - 1.6.0
- 07/04/24
- - BREAKING:
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