Skip to content

Commit

Permalink
docs: update neuron intro and change log
Browse files Browse the repository at this point in the history
  • Loading branch information
schlegelp committed Dec 21, 2022
1 parent f47f0fe commit 842342b
Show file tree
Hide file tree
Showing 2 changed files with 13 additions and 4 deletions.
4 changes: 3 additions & 1 deletion docs/source/tutorials/neurons_intro.ipynb
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,9 @@
"Neuron types\n",
"============\n",
"\n",
"Neurons in ``navis`` come in four flavours:\n",
"Depending your data/workflows you will use different ways to represent neurons. If, for example, you work with light-level data you might end up with point clouds or skeletons whereas modern connectomes typically provide meshes.\n",
"\n",
"To cater for these different data types neurons in ``navis`` come in four flavours:\n",
"\n",
".. list-table::\n",
" :widths: 10 20 20\n",
Expand Down
13 changes: 10 additions & 3 deletions docs/source/whats_new.rst
Original file line number Diff line number Diff line change
Expand Up @@ -17,15 +17,22 @@ repository.
-
* - dev
- ongoing
- -
* - 1.4.0
- 21/12/22
- - BREAKING: ``navis.flow_centrality`` was renamed to :func:`navis.synapse_flow_centrality`
and a new non-synaptic :func:`navis.flow_centrality` function was added. This also
impacts :func:`navis.split_axon_dendrite` in that you should start
using `metric='synapse_flow_centrality'`!
impacts the ``method`` parameter in :func:`navis.split_axon_dendrite`!
- `vispy` is now a soft dependency
- new function: :func:`navis.read_tiff` to read image stacks from TIFF files
- NBLASTs: single progress bar instead of one for each process
- new ``via`` parameter for :func:`navis.xform_brain`
- new utility function: :func:`navis.nbl.extract_matches`
- various bug fixes
- :func:`navis.write_swc` can now save Dotprops to SWC files
- :func:`navis.make_dotprops` can now downsample point cloud inputs
- various improvements to :func:`navis.split_axon_dendrite`, :func:`navis.nblast_allbyall`,
:func:`navis.interfaces.neuprint.fetch_mesh_neuron`, :func:`navis.interfaces.neuprint.fetch_skeletons`
- tons of bug fixes
* - 1.3.1
- 10/06/06
- - fixed various bugs
Expand Down

0 comments on commit 842342b

Please sign in to comment.