CMTK/Elastix: cater for symlinks

navis-org · Feb 24, 2022 · c38ab64 · c38ab64
1 parent 5f392fd
commit c38ab64
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/navis/transforms/cmtk.py b/navis/transforms/cmtk.py
@@ -52,8 +52,7 @@ def find_cmtkbin(tool: str = 'streamxform') -> str:
             continue
 
         try:
-            next(path.glob(tool))
-            return path
+            return next(path.glob(tool)).resolve().parent            
         except StopIteration:
             continue
         except BaseException:

diff --git a/navis/transforms/elastix.py b/navis/transforms/elastix.py
@@ -38,8 +38,7 @@ def find_elastixbin(tool: str = 'transformix') -> str:
             continue
 
         try:
-            next(path.glob(tool))
-            return path
+            return next(path.glob(tool)).resolve().parent
         except StopIteration:
             continue
         except BaseException: