readme

neherlab · Dec 8, 2017 · 3234095 · 3234095
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 ### How to run
 To run the test set: ` sh run-TestSet.sh `
 
-In `data/TestSet`, you will find a small set of five *Mycoplasma genitalium* genomes that is used in this tutorial. Your own data should also reside in such a folder within `data/` -- we will refer to this folder as *run directory* below. The name of the run directory is used as a species name in down-stream analysis.
+In `data/TestSet`, you will find a small set of four *Mycoplasma genitalium* genomes that is used in this tutorial. Your own data should also reside in such a folder within `data/` -- we will refer to this folder as *run directory* below. The name of the run directory is used as a species name in down-stream analysis.
 
 All steps can be run in order by omitting the `-st` option, whereas using `-st 5 6` will specify the analysis steps. If running only specific steps such as `-st 5 6`, steps before 5 should already be finished.