Code

Various improvements again#146

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VinceBaz merged 23 commits intonetneurolab:mainnetneurolab/netneurotools:mainfrom liuzhenqi77:improvementsliuzhenqi77/netneurotools:improvementsCopy head branch name to clipboardJan 27, 2025

+2,188-322

Commits

Commits on Nov 20, 2024

• [FIX] correct indentation in GitHub Actions workflow for docs

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• [ENH] include test file in GitHub Actions workflow for PyVista plotting tests

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Commits on Nov 23, 2024

• [ENH] add import statement for pyvista in smoke test

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• [ENH] update test functions to use tmp_path instead of tmpdir for improved compatibility

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• [ENH] add functional tests for transforms

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• [ENH] refactor functions to accept parc_ignore parameter

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Commits on Nov 25, 2024

• [ENH] add surface parcellation functions in the interface module

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• [ENH] implement Moran's I and local Moran's I calculations with optional Numba support

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• [ENH] update Numba usage to use 'has_numba' flag for compatibility

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• [ENH] update installation to include numba support and conditionally apply njit to Moran's I function

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• [ENH] update CI workflow to remove Python 3.13 from testing matrix since numba does not support it yet

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• [DOC] fix formatting in docstrings

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• [ENH] add spatial stats functions

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• [FIX] fix style

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Commits on Dec 3, 2024

• [ENH] update fetch_tian2020msa dataset fetching function

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Commits on Jan 15, 2025

• [ENH] refactor numba imports to check availability and streamline usage across modules

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• [REF] refactor network correlation and variance functions to support optional numba usage

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• [FIX] convert medial wall mask data to float to handle NaNs

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• [FIX] update scipy documentation link to the correct reference

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• [ENH] implement weighted Pearson correlation coefficient

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• [FIX] standardize string quotes and error messages in correlation functions

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• [ENH] add assortativity calculations for undirected and directed networks

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• [STYLE] format code for improved readability and consistency

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