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21 Open 19 Closed
21 Open 19 Closed
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Issues list

Create hex logo for the pipeline enhancement New feature or request
#76 opened Mar 24, 2025 by ctuni
Add the necessary genome/reference "preparation" steps enhancement New feature or request
#75 opened Mar 24, 2025 by ctuni
@ctuni
1
Add fastq preprocessing to the pipeline
#74 opened Mar 24, 2025 by Emeerdink
@Emeerdink
3
(Role) lncpipe.nf Stitcher help wanted Extra attention is needed
#69 opened Mar 24, 2025 by Emeerdink
Keep modules.json up to date
#67 opened Mar 23, 2025 by Emeerdink
Move Identify_novel_lncRNA_with_criterions process to modules
#65 opened Mar 22, 2025 by Emeerdink
Create Prepare_genome subworkflow
#64 opened Mar 22, 2025 by Emeerdink
@ctuni
Add HISAT2/EXTRACTSPLICESITES module
#60 opened Mar 20, 2025 by ctuni
Add STRINGTIE modules
#58 opened Mar 20, 2025 by ctuni
@karlaarz
Add GFFCOMPARE module
#57 opened Mar 20, 2025 by ctuni
1
@ctuni
Add GGFREAD module
#56 opened Mar 20, 2025 by ctuni
Add bedops/gtf2bed module
#54 opened Mar 20, 2025 by ctuni
Add HTSEQ/COUNT module
#53 opened Mar 20, 2025 by ctuni
1
Add KALLISTO module
#52 opened Mar 20, 2025 by ctuni
@opetryk
3
Update nf-core/lnpipe pipeline help wanted Extra attention is needed
#51 opened Mar 20, 2025 by ctuni
@ctuni @Emeerdink
1
Add nf-schema
#49 opened Mar 19, 2025 by ctuni
2
Add nf-tests
#48 opened Mar 19, 2025 by ctuni
1
@caua-monteiro
1
Create metro map of the pipeline
#46 opened Mar 19, 2025 by ctuni
@Dewey-Wang
1
Issues starting the lncpipe
#44 opened Jul 16, 2024 by rajp081105
Trouble running single-ended data
#25 opened Mar 23, 2022 by mancili
Can't pull Singularity image
#17 opened Mar 2, 2020 by cedricusureau
4
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