Migrate compare_genome_stats to nextflow_modules

[Dishalodha]

Is there an existing module for this?

• I have searched for the existing module

Is there an open PR for this?

• I have searched for existing PRs

Is there an open issue for this?

• I have searched for existing issues

Further Information

No response

Are you going to work on this?

• If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

[Dishalodha]

This module should be migrated to nextflow_modules following the guidelines in read me.
Please create a suitable nf-test accordingly.

[lgrochowalski]

Do you have test data, I could test this module with?

[Dishalodha]

yes, this module uses 2 files core_stats and ncbi_stats and compares them. You can use them from this repo ensembl-genomio. Please download this repo and install the requirements. You can also test the python module genome_stats_compare to check the output.

core_stats
ncbi_stats

db is in this format:
[production_name:"test_db", server:[host:"test_host", port:"1111", user:"ensro"], species:"test_species"]

[lgrochowalski]

In original module there is a value "stats" in the output channel. Should I have it in the new module or drop it? If I should keep it, then how should I describe it in the meta.yml?

[Dishalodha]

we would still want to keep the value "stats". I will check for an example of output tuple

[lgrochowalski]

I think, I'm ready to create PR. How can I push changes to your repo?

[Dishalodha]

Hi @lgrochowalski, could you fork the repo and create a pull request from the forked repo into nextflow_modules for us to review?