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Pull requests: nf-core/modules

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Pull requests list

Allow cram output for parabricks modules gpu module uses GPU
#7502 opened Feb 19, 2025 by famosab Loading…
17 tasks
Update version modules tcoffee to 13.46.1
#7498 opened Feb 19, 2025 by luisas Loading…
17 tasks
gatk4/markduplicates - pipe uncompressed output to speed up CRAM writing
#7497 opened Feb 18, 2025 by pontushojer • Draft
11 of 17 tasks
Krona module updates
#7489 opened Feb 16, 2025 by dialvarezs Loading…
2 of 17 tasks
Swap graphtyper/genotype to nf-test
#7484 opened Feb 14, 2025 by SPPearce Loading…
6
Add index format to samtools view Ready for Review
#7481 opened Feb 14, 2025 by fellen31 Loading…
17 tasks
4
Update fqtk to 0.3.1
#7480 opened Feb 13, 2025 by nh13 Loading…
17 tasks
2
Update subworkflow for deepvariant to version 1.8.0
#7473 opened Feb 12, 2025 by fa2k Loading…
2 of 17 tasks
3
port parabricks/haplotypecaller to nf-test and update help wanted Extra attention is needed
#7468 opened Feb 11, 2025 by famosab Loading…
17 tasks
3
update fast2q to 2.7.4
#7466 opened Feb 11, 2025 by afombravo Loading…
simplify assertion for stable files in a folder
#7462 opened Feb 10, 2025 by maxulysse • Draft
17 tasks
6
update prettier to 3.5.0
#7459 opened Feb 10, 2025 by mashehu Loading…
Rattle cluster
#7447 opened Feb 6, 2025 by chriswyatt1 Loading…
2
Update KRAKEN2/ADD to allow proper resuming
#7445 opened Feb 6, 2025 by jfy133 Loading…
17 tasks
New samtools/bgzip module to produce BGZF-compressed files.
#7433 opened Feb 5, 2025 by charles-plessy • Draft
17 tasks done
2
[DO NOT MERGE] Test PR to see how the template would look like when creating a new modules WIP Work in progress
#7430 opened Feb 4, 2025 by mirpedrol • Draft
8
Move output format information to the first queue channel of last/mafconvert
#7428 opened Feb 4, 2025 by charles-plessy Loading…
17 tasks done
Update biocontainers/cooler Docker tag to v0.10.3
#7419 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
Update biocontainers/cnvkit Docker tag to v0.9.12
#7418 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
Update dotnet monorepo
#7417 opened Feb 1, 2025 by renovate bot Loading…
2 tasks
@maxulysse @edmundmiller
add another clean-up step to GHA
#7416 opened Jan 31, 2025 by mirpedrol Loading…
1
don't run nf-test if only meta.yml was changed
#7406 opened Jan 31, 2025 by mashehu Loading…
Add db to output meta object for diamond/blastp
#7403 opened Jan 30, 2025 by erikrikarddaniel Loading…
2 of 17 tasks
5
Hifiadapterfilt
#7398 opened Jan 30, 2025 by Ge94 Loading…
14 of 17 tasks
1
8
Fix falco sample names
#7394 opened Jan 30, 2025 by MartinGrignard Loading…
5
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