Update pkgdown setup to current CI versions

.github/workflows/pkgdown.yaml

@@ -1,73 +1,54 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: main
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
 jobs:
   pkgdown:
-    runs-on: ubuntu-20.04
+    runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
-      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
-      RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/setup-r@v1
-        with:
-          r-version: release
-
-      - uses: r-lib/actions/setup-pandoc@v1
-
-      - uses: r-lib/actions/setup-tinytex@v1
-
-      - name: Install packages from cran (source)
-        run: |
-          install.packages('remotes')
-          remotes::install_github("jeroen/curl")
-          remotes::install_github("nlmixr2/dparser-R")
-          remotes::install_cran("stringi")
-          remotes::install_github("https://github.com/symengine/symengine.R")
-          remotes::install_cran("covr")
-        shell: Rscript {0}
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Cache R packages
-        uses: actions/cache@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          use-public-rspm: true
 
-      - name: Install dependencies
-        run: |
-          install.packages("remotes")
-          # To get links for homepage
-          remotes::install_cran("devtools")
-          remotes::install_deps(dependencies = TRUE)
-          remotes::install_github("nlmixr2/dparser-R")
-          remotes::install_cran("nlmixr2data")
-          remotes::install_github("nlmixr2/lotri")
-          remotes::install_github("nlmixr2/rxode2ll")
-          remotes::install_github("nlmixr2/rxode2parse")
-          remotes::install_github("nlmixr2/rxode2random")
-          remotes::install_github("nlmixr2/rxode2et")
-          remotes::install_github("nlmixr2/rxode2")
-          remotes::install_cran("pkgdown")
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: |
+            any::pkgdown
+            nlmixr2/lotri
+            nlmixr2/rxode2ll
+            nlmixr2/rxode2parse
+            nlmixr2/rxode2random
+            nlmixr2/rxode2et
+            nlmixr2/rxode2
+            local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
-      - name: Install package.
-        run: R CMD INSTALL .
-
-      - name: Deploy package
-        run: |
-          git config --local user.email "[email protected]"
-          git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -34,3 +34,4 @@ vignettes/ggpmx_GOF/
 /.RData
 /R/nlmixr_md5.R
 /R/nlmixr2_md5.R
+docs

DESCRIPTION

@@ -40,7 +40,8 @@ Description: Fit and compare nonlinear mixed-effects models in
     solving is by compiled C code provided in the 'rxode2' package (Wang,
     Hallow, and James 2015 <doi:10.1002/psp4.12052>).
 License: GPL (>=3)
-URL: https://github.com/nlmixr2/nlmixr2est
+URL: https://github.com/nlmixr2/nlmixr2est,
+    https://nlmixr2.github.io/nlmixr2est/
 Depends: 
     nlmixr2data,
     R (>= 4.0)

_pkgdown.yml

@@ -1,4 +1,4 @@
-url: https://nlmixr2.github.io/nlmixr2est
+url: https://nlmixr2.github.io/nlmixr2est/
 template:
   bootstrap: 5
   params: