fix: create a venv with uv #30

	name: Python Package using Conda

	on: [push]

	jobs:

	ci:
	needs: [ostest, full-ci]
	name: CI
	runs-on: 'ubuntu-latest'
	steps:
	- name: Done
	run: exit 0

	full-ci:
	runs-on: 'ubuntu-latest'
	strategy:
	max-parallel: 5
	matrix:
	python-version: [ "3.9", "3.10", "3.11" ]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install uv
	run: \|
	python -m pip install --upgrade pip
	pip install uv
	uv venv

	- name: Install project
	run: \|
	uv pip install .

	- name: Test with pytest
	run: \|
	uv run pytest -v

	- name: Test table io from commandline
	run: \|
	uv run geomux -i example/example.tsv.gz -o results_table.tab

	- name: Test adat io from commandline
	run: \|
	uv run geomux -i example/example.h5ad -o results_table.tab

	ostest:
	runs-on: ${{ matrix.os }}
	strategy:
	max-parallel: 5
	matrix:
	os: [ "windows-latest", "macos-latest" ]

	steps:
	- uses: actions/checkout@v3
	- name: Set up Python 3.11
	uses: actions/setup-python@v4
	with:
	python-version: 3.11

	- name: Install uv
	run: \|
	python -m pip install --upgrade pip
	pip install uv
	uv venv

	- name: Install project
	run: \|
	uv pip install .

	- name: Test with pytest
	run: \|
	uv run pytest -v

	- name: Test table io from commandline
	run: \|
	uv run geomux -i example/example.tsv.gz -o results_table.tab

	- name: Test adat io from commandline
	run: \|
	uv run geomux -i example/example.h5ad -o results_table.tab

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