chore: troubleshooting CI #39
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| name: Python Package CI | |
| on: [push] | |
| env: | |
| UV_SYSTEM_PYTHON: 1 | |
| jobs: | |
| ci: | |
| needs: [ostest, full-ci] | |
| name: CI | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - name: Done | |
| run: exit 0 | |
| full-ci: | |
| runs-on: 'ubuntu-latest' | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| run: uv python install ${{ matrix.python-version }} | |
| - name: Install project | |
| run: | | |
| uv sync --all-extras --dev | |
| - name: Test with pytest | |
| run: | | |
| uv run pytest -v | |
| - name: Test table io from commandline | |
| run: | | |
| uv run geomux -i example/example.tsv.gz -o results_table.tab | |
| - name: Test adat io from commandline | |
| run: | | |
| uv run geomux -i example/example.h5ad -o results_table.tab | |
| ostest: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| os: ["windows-latest", "macos-latest"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Set up Python 3.11 | |
| run: uv python install 3.11 | |
| - name: Install project | |
| run: | | |
| uv sync --all-extras --dev | |
| - name: Test with pytest | |
| run: | | |
| uv run pytest -v | |
| - name: Test table io from commandline | |
| run: | | |
| uv run geomux -i example/example.tsv.gz -o results_table.tab | |
| - name: Test adat io from commandline | |
| run: | | |
| uv run geomux -i example/example.h5ad -o results_table.tab |