chore: troubleshooting CI

noamteyssier · Oct 3, 2024 · ceb3f62 · ceb3f62
1 parent a1b612c
commit ceb3f62
Showing 1 changed file with 6 additions and 6 deletions.
diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -39,21 +39,21 @@ jobs:
         run: |
           uv sync --all-extras --dev
 
-      # - name: Activate venv
-      #   run: |
-      #     source .venv/bin/activate
+      - name: Activate venv
+        run: |
+          source .venv/bin/activate
 
       - name: Test with pytest
         run: |
-          uv run pytest -v
+          run pytest -v
 
       - name: Test table io from commandline
         run: |
-          uv run geomux -i example/example.tsv.gz -o results_table.tab
+          geomux -i example/example.tsv.gz -o results_table.tab
 
       - name: Test adat io from commandline
         run: |
-          uv run geomux -i example/example.h5ad -o results_table.tab
+          geomux -i example/example.h5ad -o results_table.tab
 
   # ostest:
   #   runs-on: ${{ matrix.os }}