Merge pull request #174 from nsidc/remove_reference_ncattr #653
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| name: CI | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| # Default to bash in login mode; key to activating conda environment | |
| # https://github.com/mamba-org/provision-with-micromamba#IMPORTANT | |
| defaults: | |
| run: | |
| shell: "bash -l {0}" | |
| jobs: | |
| test: | |
| name: "Run tests" | |
| runs-on: "ubuntu-latest" | |
| steps: | |
| - name: "Check out repository" | |
| uses: "actions/checkout@v4" | |
| - name: "Install Conda environment" | |
| uses: "mamba-org/setup-micromamba@v1" | |
| with: | |
| micromamba-version: '1.5.10-0' # any version from https://github.com/mamba-org/micromamba-releases | |
| environment-file: "conda-lock.yml" | |
| # When using a lock-file, we have to set an environment name. | |
| environment-name: "seaice_ecdr-ci" | |
| cache-environment: true | |
| # Increase this key to trigger cache invalidation | |
| cache-environment-key: 2 | |
| # Linter | |
| - name: "Run pre-commit tests" | |
| run: "pre-commit run --all-files" | |
| # Check out repos resquired for unit tests. | |
| - name: "Check out pm_icecon repository" | |
| uses: "actions/checkout@v4" | |
| with: | |
| repository: "nsidc/pm_icecon" | |
| ref: "main" | |
| path: "pm_icecon" | |
| - name: "Check out pm_tb_data repository" | |
| uses: "actions/checkout@v4" | |
| with: | |
| repository: "nsidc/pm_tb_data" | |
| ref: "main" | |
| path: "pm_tb_data" | |
| # Our code expects `/share/apps/G02202_V5` to exist already, and raises an | |
| # error if it does not. This would be a sign, on NSIDC infrastructure, | |
| # that NFS mounts are not setup correctly. For CI, we can just create | |
| # those dirs: | |
| - name: "Make share dir" | |
| run: "sudo mkdir -p /share/apps/G02202_V5 && sudo chown -R runner:runner /share/" | |
| # Unit tests | |
| - name: "Run typecheck and tests" | |
| run: "PYTHONPATH=/home/runner/work/seaice_ecdr/seaice_ecdr/:/home/runner/work/seaice_ecdr/seaice_ecdr/pm_icecon/:/home/runner/work/seaice_ecdr/seaice_ecdr/pm_tb_data/ DISABLE_FILE_LOGGING=TRUE invoke test.ci" |