master: use VariantSampleIndexParams class, #TASK-6219

opencb · Feb 25, 2025 · 25ed470 · 25ed470
1 parent 77f6118
commit 25ed470
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/...ster/src/main/java/org/opencb/opencga/master/monitor/daemons/VariantOperationJanitor.java b/...ster/src/main/java/org/opencb/opencga/master/monitor/daemons/VariantOperationJanitor.java
@@ -20,6 +20,7 @@
 import org.opencb.opencga.core.exceptions.ToolException;
 import org.opencb.opencga.core.models.common.Enums;
 import org.opencb.opencga.core.models.job.Job;
+import org.opencb.opencga.core.models.operations.variant.VariantSecondarySampleIndexParams;
 import org.opencb.opencga.core.models.organizations.Organization;
 import org.opencb.opencga.core.models.project.Project;
 import org.opencb.opencga.core.models.study.Study;
@@ -314,8 +315,10 @@ public OperationExecutionConfig getConfig() {
 
         @Override
         public void addSpecificParams(Map<String, Object> params) {
-            params.put("sample", ParamConstants.ALL);
-            params.put("familyIndex", true);
+            VariantSecondarySampleIndexParams variantSecondarySampleIndexParams = new VariantSecondarySampleIndexParams()
+                    .setSample(Collections.singletonList(ParamConstants.ALL))
+                    .setFamilyIndex(true);
+            params.putAll(variantSecondarySampleIndexParams.toParams());
         }
     }