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1. pyensembl pyensembl Public

   Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

   Python 393 68

2. varcode varcode Public

   Library for manipulating genomic variants and predicting their effects

   Python 84 24

3. mhcflurry mhcflurry Public

   Peptide-MHC I binding affinity prediction

   Python 205 60

4. vaxrank vaxrank Public

   Ranked vaccine peptides for personalized cancer immunotherapy

   Python 57 23

5. mhctools mhctools Public

   Python interface to running command-line and web-based MHC binding predictors

   Python 96 22

6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

   Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

   Python 80 26