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    152 repositories

    • hbcd-docs-internal

      Public
      Mermaid
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • biceps_cmdln

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated Aug 4, 2025Aug 4, 2025

    • Seg-Model-Creation-GUI

      Public
      A user interface for nNUnet model training
      Python
      •
      BSD 2-Clause "Simplified" License
      •2•0•10•0•Updated Aug 4, 2025Aug 4, 2025

    • auto-label-emotions

      Public
      Auto-label events that happen in video files.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • opendatainit-docs

      Public
      Python
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • loes-scoring-2

      Public
      Code for automated Loes scoring.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 31, 2025Jul 31, 2025

    • SynthSeg

      Public
      Contrast-agnostic segmentation of MRI scans
      Python
      •127•1•8•0•Updated Jul 29, 2025Jul 29, 2025

    • cdni-brain

      Public
      readthedocs for CDNI collaborators and members
      readthedocs
      2•3•29•1•Updated Jul 29, 2025Jul 29, 2025

    • score-conners-3

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jul 28, 2025Jul 28, 2025

    • infant_oddball_precision_imaging

      Public
      This code repo contains the code used to create the figures in the publication "Precision Functional Neuroimaging Reveals Individually Specific Auditory Responses in Infants"
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2025Jul 25, 2025

    • dcan-nn-unet

      Public
      Utility programs created for using nn-UNet on ABCD data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•2•0•0•Updated Jul 22, 2025Jul 22, 2025

    • BIBSnet

      Public
      This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
      Python
      •
      Apache License 2.0
      •9•7•17•2•Updated Jul 22, 2025Jul 22, 2025

    • OSPREY_BIDS

      Public
      Houses the Dockerfile used to compile OSPREY
      Python
      •
      MIT License
      •0•1•1•0•Updated Jul 17, 2025Jul 17, 2025

    • medpy

      Public
      Medical image processing in Python
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •145•0•0•0•Updated Jul 16, 2025Jul 16, 2025

    • nnUNet

      Public
      Python
      •
      Apache License 2.0
      •2.1k•0•0•0•Updated Jul 16, 2025Jul 16, 2025

    • lifespan_seg_model_data

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • abcd-hcp-pipeline

      Public
      bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
      pipelineimage-processingfmrimri-imagesbids-formatfmri-preprocessing
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •20•56•9•2•Updated Jul 2, 2025Jul 2, 2025

    • beta-repo

      Public
      0•0•0•0•Updated Jun 30, 2025Jun 30, 2025

    • nda-abcd-collection-3165

      Public
      This is archival documentation for NDA collection 3165.
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • abcc_dicom2bids_s3

      Public
      Python
      •0•1•0•0•Updated Jun 25, 2025Jun 25, 2025

    • nhp-abcd-bids-pipeline

      Public
      Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•5•5•0•Updated Jun 25, 2025Jun 25, 2025

    • dcan-macaque-pipeline

      Public
      The actual pipeline code, based on hcp, for non-human-primates - sp macaques.
      scriptshcppipeline
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •5•3•2•0•Updated Jun 25, 2025Jun 25, 2025

    • nhp-abcd-bids-pipeline-synth

      Public
      Non-human primate (i.e., macaque) pipeline, based on abcd-hcp-pipeline, to process fMRI data. Incorporates Synth, a fieldmap-less distortion correction method for fMRI.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Jun 25, 2025Jun 25, 2025

    • dcan_bold_processing

      Public
      functional connectivity preprocessing for resting state fMRI outputs of the dcan-fmri-pipelines
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •8•8•4•2•Updated Jun 25, 2025Jun 25, 2025

    • compare_matrices_to_assign_networks

      Public
      MATLAB
      •
      Other
      •4•14•4•0•Updated Jun 24, 2025Jun 24, 2025

    • file-mapper

      Public
      An easy tool to copy/move/symlink files from one directory to the other!
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•7•3•2•Updated Jun 23, 2025Jun 23, 2025

    • abcc_motion_reg_generator

      Public
      This repo has the code for generating motion regressor files from reformatted motion regressor files
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • BrainSwipes

      Public
      A crowdsource quality assurance application for use with neuroimaging datasets.
      neuroimagingcrowdsourcingquality-assurance
      Vue
      •
      Apache License 2.0
      •1•0•13•0•Updated Jun 16, 2025Jun 16, 2025

    • infant-abcd-bids-pipeline

      Public
      Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
      dockerfilebidsapp
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•10•1•0•Updated May 30, 2025May 30, 2025

    • HBCD_Data_Dictionaries

      Public
      repo to help manage hbcd data dictionaries
      2•0•0•0•Updated May 26, 2025May 26, 2025