Repositories list

• lennonlab.github.io

  Public
  HTML

  •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• cost_of_spore

  Public
  Here we quantified the energetic cost of sporulation in units of ATP by integrating time-resolved genome, transcriptome, and proteome profiles. We incorporated our estimates into mechanistic models to show how metabolic constraints shape sporulation efficiency and selection.

  R

  •

  MIT License

  •2•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• astrodorm

  Public
  R

  •

  GNU Affero General Public License v3.0

  •2•0•0•0•Updated Jul 27, 2025Jul 27, 2025

• danger.signal

  Public
  HTML

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  GNU General Public License v3.0

  •2•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• division.labor

  Public
  HTML

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  GNU General Public License v3.0

  •3•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• ASG-fitness-effects

  Public
  Code for "Effects of auxiliary sporulation genes on fitness" project

  R

  •1•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• cv

  Public
  TeX

  •0•0•0•0•Updated Jun 26, 2025Jun 26, 2025

• SporGermDB

  Public
  Identifies sporulation and germination genes on Uniprot and creates a reference database for lab use

  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• Auxiliary-Germination-Genes

  Public
  Repo for all things related to host germination genes found in viral genomes

  1•0•0•0•Updated Jun 16, 2025Jun 16, 2025

• evolution-canyon

  Public
  R

  •3•0•0•0•Updated May 13, 2025May 13, 2025

• VirosporeQuant

  Public
  1•0•0•0•Updated Apr 28, 2025Apr 28, 2025

• MetabolicDistribution

  Public
  R

  •

  GNU General Public License v3.0

  •2•0•0•1•Updated Apr 24, 2025Apr 24, 2025

• SporeMut

  Public
  mutation accumulation in dormancy

  R

  •2•0•0•0•Updated Apr 24, 2025Apr 24, 2025

• lennonlab-original.github.io

  Public
  lennon lab website

  HTML

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  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 22, 2025Apr 22, 2025

• lennonlab2.github.io

  Public
  HTML

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  MIT License

  •0•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• R-package.installer

  Public
  Simplify re-loading of packages following R update

  R

  •1•0•0•0•Updated Apr 9, 2025Apr 9, 2025

• viro.fluidics

  Public
  R

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• SporePlaque

  Public
  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• seedtheory

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Apr 6, 2025Apr 6, 2025

• p-meso

  Public
  GitHub Repo for mothur and R code included in Muscarella ME, Bird KC, Larsen ML, Placella SA, Lennon JT (In Press) Phosphorus resource heterogeneity in microbial food webs

  R

  •

  GNU General Public License v3.0

  •4•1•0•0•Updated Apr 6, 2025Apr 6, 2025

• Rpf

  Public
  OCaml

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  GNU General Public License v3.0

  •2•0•0•0•Updated Mar 29, 2025Mar 29, 2025

• ResidenceTime_NichePartitioning

  Public
  R

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  GNU General Public License v3.0

  •2•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• sporeAI

  Public
  predicting sporulation

  Jupyter Notebook

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• qbiodiversity

  Public
  Website for Quantitative Biodiversity course.

  HTML

  •2•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• Entrapped-omics

  Public
  1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• symcel

  Public
  Bacillus microcalorimetry and growth

  GNU Affero General Public License v3.0

  •2•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• residence-time-test

  Public
  R

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  GNU General Public License v3.0

  •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• SporeCosts

  Public
  Final repository for the spore cost project.

  R

  •

  MIT License

  •2•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• Rhizo_phage

  Public
  Rhizobia-phage interaction project

  Shell

  •1•0•0•0•Updated Aug 25, 2024Aug 25, 2024

• spore-life

  Public
  Python

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  MIT License

  •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024