Repositories list

• pride-mcp-server

  Public
  Python

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• opentargets

  Public
  Repository of opentargets scripts to move data from PRIDE expression to OpenTargets.

  Python

  •

  Apache License 2.0

  •1•0•1•0•Updated Aug 4, 2025Aug 4, 2025

• exclusions

  Public
  0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• px-doi-ws

  Public
  px-doi webservice

  Java

  •1•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• px-submission-tool

  Public
  ProteomeXchange data submission tool

  Java

  •6•4•4•1•Updated Jul 23, 2025Jul 23, 2025

• quetzal-annotator

  Public
  Main Quetzal annotator code

  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• protein-details-fetcher

  Public
  Protein details fetcher from Repositories UNIPROT, ENSEMBL

  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Jul 12, 2025Jul 12, 2025

• pride-mod

  Public
  PRIDE-Mod is a Java API to handle different modifications such as UNIMOD or PSI-MOD.

  Java

  •2•4•2•2•Updated Jul 12, 2025Jul 12, 2025

• pride-archive-api

  Public
  PRIDE Archive public Restful API

  Java

  •1•0•13•0•Updated Jul 8, 2025Jul 8, 2025

• crosslinking-api

  Public
  xiview-api provides REST endpoints to access crosslinking resources in PRIDE

  Python

  •

  Apache License 2.0

  •3•1•2•0•Updated Jul 1, 2025Jul 1, 2025

• mzidentml-reader

  Public
  Python

  •

  Apache License 2.0

  •7•0•6•1•Updated Jul 1, 2025Jul 1, 2025

• pride-ontology

  Public
  The PRIDE ontology

  Creative Commons Attribution 4.0 International

  •12•2•0•2•Updated Jun 24, 2025Jun 24, 2025

• pride-resources

  Public
  PRIDE Resources Forum (https://github.com/PRIDE-Archive/pride-resources/discussions)

  discussiondocumentationpride

  Apache License 2.0

  •1•1•0•1•Updated Jun 6, 2025Jun 6, 2025

• nf-downloadstats

  Public
  A pipeline to calculate number of file downloads

  Python

  •

  Apache License 2.0

  •2•1•0•0•Updated Jun 2, 2025Jun 2, 2025

• xiview-server

  Public
  HTML

  •2•0•0•0•Updated May 30, 2025May 30, 2025

• pubmed-id-fetcher

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated May 27, 2025May 27, 2025

• pridepy

  Public
  Python client for PRIDE Archive Rest API.

  pythonproteomicsmass-spectrometry+ 3pridepride-databasepython-client

  Python

  •

  Apache License 2.0

  •4•24•0•0•Updated Apr 15, 2025Apr 15, 2025

• mcp_eupmc_search

  Public
  Python

  •1•0•0•0•Updated Apr 10, 2025Apr 10, 2025

• mcp_pride_archive_search

  Public
  Model Context Protocol (MCP) PRIDE API Server implementation.

  Python

  •2•2•0•1•Updated Apr 8, 2025Apr 8, 2025

• px-web-app

  Public
  CSS

  •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

• .github

  Public
  Apache License 2.0

  •0•0•0•0•Updated Feb 1, 2025Feb 1, 2025

• xxindex

  Public
  A library to index XML files for random access.

  Java

  •5•2•1•0•Updated Oct 7, 2024Oct 7, 2024

• pride-mongodb-repo

  Public archive
  This repo contains the Repository for PRIDE mongo Database

  spring-bootmongodbproteomics+ 3mass-spectrometrypride-databasespring-mongodb

  Java

  •

  Apache License 2.0

  •1•0•0•3•Updated Oct 5, 2024Oct 5, 2024

• pride-solr-indexes

  Public archive
  This repository will store all the classes models to handle pride solr indexes.

  XSLT

  •2•0•0•2•Updated Sep 19, 2024Sep 19, 2024

• pride-solr-api-client

  Public archive
  Java

  •1•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• DataHarmonizer

  Public
  A standardized browser-based spreadsheet editor and validator that can be run offline and locally.

  JavaScript

  •

  MIT License

  •32•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• pride-solr-commons

  Public archive
  Java

  •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• pride-lorikeet

  Public
  0•0•0•0•Updated May 20, 2024May 20, 2024

• xiview-monit

  Public
  Dockerfile

  •0•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• ols-client

  Public
  Java ols client designed for OLS-Dialog tool

  Java

  •7•3•0•1•Updated Mar 18, 2024Mar 18, 2024