Repositories list

• decipher_reproducibility

  Public
  Jupyter Notebook

  •2•3•0•0•Updated Feb 4, 2025Feb 4, 2025

• dli_reproducibility

  Public
  Notebooks to recreate paper figures

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Jan 24, 2025Jan 24, 2025

• echidna

  Public
  Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

• echidna_reproducibility

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Dec 30, 2024Dec 30, 2024

• starfysh_reproducibility

  Public
  Jupyter Notebook

  •2•7•0•0•Updated Nov 26, 2024Nov 26, 2024

• DIISCO_public

  Public
  Publically accessible code for DIISCO method

  Jupyter Notebook

  •

  MIT License

  •1•10•4•1•Updated Oct 29, 2024Oct 29, 2024

• decipher

  Public
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions

  Python

  •0•28•1•0•Updated Sep 9, 2024Sep 9, 2024

• starfysh

  Public
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •14•111•3•0•Updated Aug 21, 2024Aug 21, 2024

• sdcd

  Public
  Stable Differentiable Causal Discovery (SDCD)

  Jupyter Notebook

  •

  MIT License

  •2•21•0•0•Updated Jun 17, 2024Jun 17, 2024

• decipher_data

  Public
  Data (small) for decipher tutorials.

  MIT License

  •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

• CEVVO

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 4, 2023Nov 4, 2023

• LF_CP_JF_Final_NMF_Treg-Fibroblast

  Public
  final project of Cameron Park, Joy Fan, and Lauren Friend for the Fall 2020 BMEN 4480 course taught by Dr. Azizi

  Jupyter Notebook

  •0•0•0•0•Updated Dec 18, 2020Dec 18, 2020

• dli_gpr

  Public
  GP regression model for DLI therapy data for CML

  Jupyter Notebook

  •1•0•0•0•Updated Jun 3, 2020Jun 3, 2020