Repositories list

• biotoolsDocs

  Public
  Documentation for bio.tools and related community projects

  GNU General Public License v3.0

  •13•5•13•0•Updated Jan 9, 2025Jan 9, 2025

• biohackathon2024

  Public
  ELIXIR Biohackathon 2024 project nr. 16

  biohackeu24

  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•0•0•Updated Dec 19, 2024Dec 19, 2024

• biotoolsRegistry

  Public
  biotoolsregistry : discovery portal for bioinformatics

  HTML

  •

  GNU General Public License v3.0

  •21•71•166•10•Updated Dec 18, 2024Dec 18, 2024

• biohackathon2024-paper

  Public
  BioHackrXiv paper from BioHackathon Europe 2024 Project #16

  TeX

  •0•0•1•0•Updated Dec 2, 2024Dec 2, 2024

• biohackathon2021

  Public
  biohackeu21

  Python

  •1•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• bio-tools-curation-tooling

  Public
  Python

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• pub2tools

  Public
  A utility constructing bio.tools entries from publications

  Java

  •

  GNU General Public License v3.0

  •5•4•0•0•Updated Sep 2, 2024Sep 2, 2024

• galaxy

  Public
  Data intensive science for everyone.

  Python

  •

  Other

  •1k•1•0•0•Updated Aug 15, 2024Aug 15, 2024

• biotoolsSchema

  Public
  biotoolsSchema : Tool description data model for computational tools in life sciences

  HTML

  •

  Creative Commons Attribution Share Alike 4.0 International

  •12•37•47•6•Updated Feb 17, 2024Feb 17, 2024

• content-sandbox

  Public
  Experimental repo of bio.tools content for augmentation with other sources of tool information

  30•0•0•27•Updated Oct 22, 2023Oct 22, 2023

• biotoolsConnect

  Public
  Adaptors for content exchange between bio.tools and community projects.

  biohackeu20

  Python

  •9•4•3•7•Updated Feb 20, 2023Feb 20, 2023

• biohackathon2022

  Public
  ELIXIR Biohackathon 2022 project nr. 25

  biohackeu22

  Jupyter Notebook

  •

  MIT License

  •4•0•0•0•Updated Feb 15, 2023Feb 15, 2023

• biotoolsSum

  Public
  bio.tools interface with report generation features

  JavaScript

  •

  MIT License

  •5•5•4•24•Updated Jan 12, 2023Jan 12, 2023

• debian-med-links-analysis

  Public
  A python notebook to keep track of the cross-linking between bio.tools and EDAM

  Jupyter Notebook

  •

  MIT License

  •5•1•0•10•Updated Dec 8, 2022Dec 8, 2022

• Tool-Information-Standards

  Public
  GitHub pages website summarising information standards for the description of bioinformatics software tools.

  7•2•3•2•Updated Nov 29, 2022Nov 29, 2022

• bioinformatics-software-metadata-enhancement

  Public archive
  TeX

  •

  Creative Commons Zero v1.0 Universal

  •6•1•0•0•Updated Nov 14, 2022Nov 14, 2022

• ebi2biotools

  Public
  Script to enable updating EBI services in bio.tools

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 17, 2022Jul 17, 2022

• biotoolsSchemaDocs

  Public
  Documentation for biotoolsSchema

  Makefile

  •

  Other

  •5•2•4•0•Updated Apr 15, 2021Apr 15, 2021

• biotoolsSchemaJ

  Public
  biotoolsSchemaJ: documentation for JSON schema version of biotoolsSchema (tool description data model for computational tools in life sciences)

  0•0•0•0•Updated Nov 8, 2020Nov 8, 2020

• biotools-github-editor

  Public
  bio.tools content editing driven by GitHub API

  HTML

  •

  GNU General Public License v3.0

  •4•3•0•1•Updated Oct 13, 2020Oct 13, 2020

• Tool-Information-Profiles

  Public
  JSON schema for definition of tool information profiles - a JSON document which specifies which tool attributes should be specified for different types of tools within a set of tool descriptions.

  Jupyter Notebook

  •0•0•1•0•Updated Jun 23, 2020Jun 23, 2020

• biotoolsRdf

  Public
  RDF data and SPARQL queries for producing/consuming Bio.Tools as Linked Data

  4•5•12•0•Updated Jun 4, 2020Jun 4, 2020

• biotoolsShim

  Public
  Adapters for converting biotoolsSchema-compatible file formats.

  HTML

  •3•1•7•0•Updated May 25, 2020May 25, 2020

• content.jsonld

  Public
  0•2•0•0•Updated Nov 21, 2019Nov 21, 2019

• codemeta.github.io

  Public
  CodeMeta web site

  CSS

  •20•0•0•0•Updated Nov 15, 2019Nov 15, 2019

• codemeta

  Public
  Minimal metadata schemas for science software and code, in JSON-LD

  Python

  •

  Apache License 2.0

  •82•0•0•0•Updated Nov 14, 2019Nov 14, 2019

• edamToolAnnotator

  Public
  EDAM Tool Annotator for bio.tools

  JavaScript

  •

  MIT License

  •3•3•5•0•Updated Aug 28, 2019Aug 28, 2019

• biotoolsLint

  Public
  Utility for verification of bio.tools content with reporting

  3•1•46•0•Updated May 23, 2019May 23, 2019

• extractInterEDAMLinks

  Public
  R

  •3•1•0•0•Updated Nov 16, 2018Nov 16, 2018

• utilities

  Public
  Miscellaneous utilities and recipes for working with bio.tools

  3•1•0•0•Updated Oct 16, 2018Oct 16, 2018