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    12 repositories

    • 2024_Iyer_Genemod

      Public
      Python
      •1•0•0•0•Updated Nov 30, 2024Nov 30, 2024

    • 2024_vanDijk_PLoS_CytoSummaryNet

      Public
      Jupyter Notebook
      •1•1•13•0•Updated Nov 3, 2024Nov 3, 2024

    • motive

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•9•2•0•Updated Oct 23, 2024Oct 23, 2024

    • 2023_Arevalo_NatComm_BatchCorrection

      Public
      Evaluating batch correction methods for image-based cell profiling
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•10•1•1•Updated Oct 21, 2024Oct 21, 2024

    • 2022_Rohban_CellSystems

      Public
      Virtual screening for small-molecule pathway regulators by image-profile matching
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Aug 29, 2024Aug 29, 2024

    • 2024_Kalinin_mAP

      Public
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • 2024_Chandrasekaran_NatureMethods

      Public
      A benchmark dataset of three million of images of cells perturbed by chemical and genetic perturbations
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •11•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • 2023_Haghighi_IJCAI

      Public
      Pseudo-Labeling Enhanced by Privileged Information and its application to In Situ Sequencing Images
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 21, 2023Sep 21, 2023

    • 2024_LacosteHaghighi_Cell_Mislocalization

      Public
      Cell-painting data analysis corresponding to the "Pervasive mislocalization of pathogenic coding variants underlying human diseases" paper
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•1•0•Updated Sep 6, 2023Sep 6, 2023

    • 2022_Haghighi_NatureMethods

      Public
      High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •10•46•8•0•Updated Jun 21, 2023Jun 21, 2023

    • 2023_Cimini_NatureProtocols

      Public
      Optimizing the Cell Painting assay for image-based profiling
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•19•7•0•Updated May 12, 2023May 12, 2023

    • .github

      Public
      0•0•0•0•Updated Apr 3, 2023Apr 3, 2023