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    41 repositories

    • bsb

      Public
      The Brain Scaffold Builder
      python
      Python
      •
      GNU General Public License v3.0
      •1•4•125•1•Updated Jul 31, 2025Jul 31, 2025

    • cerebellar-models

      Public
      Models of the cerebellum
      Python
      •
      GNU Affero General Public License v3.0
      •1•4•10•0•Updated Jul 25, 2025Jul 25, 2025

    • sphinxext-bsb

      Public archive
      Sphinx extension for the BSB documentation
      Python
      •
      MIT License
      •0•0•2•0•Updated Jun 11, 2025Jun 11, 2025

    • arborize

      Public archive
      A Python package that allows Arbor-like descriptions of cell models for NEURON.
      pythonneuron
      Python
      •
      GNU General Public License v3.0
      •3•1•2•0•Updated Jun 11, 2025Jun 11, 2025

    • patch

      Public archive
      A Pythonic object-oriented drop-in replacement for the Python interface to NEURON
      Python
      •
      MIT License
      •2•2•6•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-json

      Public archive
      JSON configuration parser and tooling for the BSB
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-yaml

      Public archive
      YAML parser for the BSB framework
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • glia

      Public archive
      NMODL asset manager
      libraryneuronarborasset-managementnmodl
      Python
      •
      GNU General Public License v3.0
      •0•2•9•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-nest

      Public archive
      NEST simulation adapter for the BSB framework
      Python
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-arbor

      Public archive
      Arbor simulation adapter for the BSB framework
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-test

      Public archive
      Helps component developers build tests for BSB components
      AGS Script
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-hdf5

      Public archive
      The HDF5 storage engine of the BSB
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 11, 2025Jun 11, 2025

    • bsb-neuron

      Public archive
      NEURON simulation adapter for the BSB framework
      Python
      •
      GNU General Public License v3.0
      •1•1•0•2•Updated Jun 11, 2025Jun 11, 2025

    • bsb-core

      Public archive
      The Brain Scaffold Builder
      python
      Python
      •
      GNU General Public License v3.0
      •16•23•0•1•Updated Jun 11, 2025Jun 11, 2025

    • annotateCerebellum

      Public
      Tools to visualize and correct cerebellum volumetric annotations
      Python
      •0•0•0•0•Updated May 4, 2025May 4, 2025

    • catalogue

      Public
      Mechanism catalogue for the DBBS NMODL asset collection.
      NMODL
      •
      Other
      •1•0•0•3•Updated Mar 21, 2025Mar 21, 2025

    • models

      Public
      Collection of neuron models for the NEURON simulator
      AGS Script
      •
      GNU General Public License v3.0
      •9•3•6•1•Updated Mar 21, 2025Mar 21, 2025

    • cereb-nest

      Public
      Module for NEST simulator developed in the Project CerebNEST, aiming to recreate and simulate in NEST realistic cerebellar-inspired models.
      C++
      •
      GNU General Public License v2.0
      •7•3•3•4•Updated Mar 15, 2024Mar 15, 2024

    • dbbs-mod-collection

      Public archive
      Glia package containing all our mod files
      AMPL
      •7•0•0•0•Updated Jan 19, 2024Jan 19, 2024

    • modelling-intro

      Public
      Introductory course to neural modelling
      Python
      •
      The Unlicense
      •0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • astrocyte

      Public archive
      Packager for Glia. Distribute your models amongst the stars
      Python
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Dec 12, 2023Dec 12, 2023

    • bsb-plotting

      Public
      Plotting tools for the BSB framework
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • bsb-webstack

      Public
      TypeScript
      •0•0•0•0•Updated Nov 8, 2023Nov 8, 2023

    • nrn-diff

      Public
      NEURON object differ
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

    • ccio

      Public
      Integrated CC and IO model
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 13, 2023Sep 13, 2023

    • bsb-brian

      Public
      BSB plugin for the Brian simulator
      Python
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated May 31, 2023May 31, 2023

    • dystonia_ebcc

      Public
      Code to simulate mouse models of dystonia during EyeBlink Classical Conditioning (EBCC), described in Geminiani et al., Front Syst Neurosci, 2022.
      Python
      •1•1•0•0•Updated Jan 4, 2023Jan 4, 2023

    • dbbs-tools

      Public
      Repository to build our Docker image with all the required tools that are used in the laboratory.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 25, 2022Nov 25, 2022

    • student-umbrella

      Public
      Students, don't let your enthousiasm get rained on. This umbrella will (soon) cover all the material you need to be familiar with for a successful thesis at our lab
      The Unlicense
      •0•0•0•0•Updated Jun 20, 2022Jun 20, 2022

    • deschepper-etal-2021

      Public
      Images and videos used in De Schepper et. al. (2021)
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 15, 2022Jun 15, 2022