Repositories list

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •10•7•30•12•Updated Jan 30, 2025Jan 30, 2025

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlgene-ontology+ 5obogeneontologyfunctional-annotationobofoundryontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •40•226•728•50•Updated Jan 30, 2025Jan 30, 2025

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  documentationgene-ontologygeneontology+ 2yamlmetadata

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •89•46•237•44•Updated Jan 29, 2025Jan 29, 2025

• gopreprocess

  Public
  Python

  •

  MIT License

  •1•3•1•0•Updated Jan 29, 2025Jan 29, 2025

• noctua-alliance-pathway-preview

  Public
  TypeScript

  •0•0•5•0•Updated Jan 28, 2025Jan 28, 2025

• minerva

  Public
  geneontologygafnoctua+ 2noctua-modelsconverter

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •8•6•61•10•Updated Jan 27, 2025Jan 27, 2025

• go-technical-announcements

  Public
  Follow this repository to stay up-to-date on important public API and data changes for the Gene Ontology. Any developer or site that depends on the GO as an API or data source should follow this repository.

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• gocam-py

  Public
  Draft data model for GO-CAMs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•1•Updated Jan 27, 2025Jan 27, 2025

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationpathwaysgeneontology+ 3noctua-modelsgo-camontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •3•11•34•2•Updated Jan 26, 2025Jan 26, 2025

• noctua-form-base

  Public
  librarygeneontologygo-cam+ 1annotations

  TypeScript

  •1•0•0•0•Updated Jan 25, 2025Jan 25, 2025

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  ontologygenescuration+ 4geneontologyfunctional-annotationannotationannotations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•37•398•2•Updated Jan 25, 2025Jan 25, 2025

• wc-gocam-viz

  Public
  Web component to visualize GO-CAMs

  geneontologygo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•14•0•Updated Jan 24, 2025Jan 24, 2025

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3genesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•30•175•25•Updated Jan 23, 2025Jan 23, 2025

• pipeline-raw-go-cam

  Public
  [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

  BSD 3-Clause "New" or "Revised" License

  •0•0•1•0•Updated Jan 10, 2025Jan 10, 2025

• web-gocam

  Public
  GO-CAM site as an Angular 2+ Application

  annotationsgeneontologynoctua+ 2noctua-modelsgo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•11•0•Updated Jan 10, 2025Jan 10, 2025

• helpdesk

  Public
  The Gene Ontology Helpdesk

  gohelpdeskontology+ 8gene-ontologygenesontologiescurationgeneontologyfunctional-annotationnoctua+ 1

  6•16•12•0•Updated Jan 10, 2025Jan 10, 2025

• noctua-standard-annotations

  Public
  TypeScript

  •0•0•14•0•Updated Jan 9, 2025Jan 9, 2025

• web-components

  Public
  EXPERIMENTAL Unified web component library

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•0•Updated Jan 7, 2025Jan 7, 2025

• go-fastapi

  Public
  Python

  •3•6•5•1•Updated Jan 6, 2025Jan 6, 2025

• obographs

  Public
  Basic and Advanced OBO Graphs: specification and reference implementation

  jsongraphsowl+ 6gene-ontologyontologiesgeneontologyobofoundryontology-standardsontology

  Java

  •12•64•50•2•Updated Dec 20, 2024Dec 20, 2024

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  geneontologypipeline

  BSD 3-Clause "New" or "Revised" License

  •5•5•87•2•Updated Dec 17, 2024Dec 17, 2024

• noctua-landing-page

  Public
  geneontologynoctuanoctua-models+ 1go-cam

  TypeScript

  •0•1•20•8•Updated Dec 10, 2024Dec 10, 2024

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  HCL

  •1•0•4•1•Updated Dec 5, 2024Dec 5, 2024

• pipeline-from-goa

  Public
  The new GO pipeline that runs after GOA has made QC file products available.

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  pathwaysgeneontologybiopax+ 2go-camontology

  Java

  •0•8•109•0•Updated Nov 22, 2024Nov 22, 2024

• project-management

  Public
  Tracking project metadata in the GO as issues.

  0•2•68•0•Updated Nov 18, 2024Nov 18, 2024

• wc-ribbon

  Public
  This repository contains a collection of web components, initially centered on the GO ribbon, a UI tool to visualize a summary of annotations for gene and gene sets.

  godataui+ 6webcomponentannotationribbonassociationgeneontology

  TypeScript

  •2•2•16•6•Updated Nov 15, 2024Nov 15, 2024

• reactome-go-cams

  Public
  A set of GO-CAMs built automatically from Reactome pathways.

  pathwaysreactomegeneontology+ 3reactome-pathwaynoctua-modelsgo-cam

  0•1•2•1•Updated Nov 5, 2024Nov 5, 2024

• neo

  Public
  noctua entity ontology

  annotationobogeneontology+ 3gafgo-camontology

  Perl

  •2•9•30•4•Updated Oct 26, 2024Oct 26, 2024

• devops-documentation

  Public
  General and specific documentation for geneontology DevOps

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•0•Updated Oct 24, 2024Oct 24, 2024