Repositories list

• collaborations

  Public
  Collaborations across campus

  SCSS

  •0•0•0•0•Updated Mar 26, 2025Mar 26, 2025

• Training-modules

  Public
  Materials for short, half-day workshops

  Jupyter Notebook

  •

  Other

  •150•325•18•3•Updated Mar 26, 2025Mar 26, 2025

• Intro-to-bulk-RNAseq

  Public
  Introduction to bulk RNA-seq

  HTML

  •42•105•7•1•Updated Mar 25, 2025Mar 25, 2025

• Intro-to-scRNAseq

  Public
  R

  •194•573•10•0•Updated Mar 25, 2025Mar 25, 2025

• main

  Public template
  SCSS

  •

  Other

  •17•53•0•1•Updated Mar 25, 2025Mar 25, 2025

• Intro-to-DGE

  Public
  HTML

  •83•192•6•0•Updated Mar 21, 2025Mar 21, 2025

• Pseudobulk-for-scRNAseq

  Public
  Approaches for looking at differential expression and differential abundance in scRNA-seq

  R

  •

  Creative Commons Zero v1.0 Universal

  •1•0•9•1•Updated Mar 14, 2025Mar 14, 2025

• spatial_nanocourse

  Public
  Module for Visium HD analysis for Nanocourse organized by SCC

  HTML

  •0•1•3•0•Updated Feb 26, 2025Feb 26, 2025

• Accessing_public_genomic_data

  Public
  Tutorials on accessing public reference and genomic data

  HTML

  •16•30•2•0•Updated Feb 18, 2025Feb 18, 2025

• Intro-to-R-flipped

  Public
  R

  •42•80•1•0•Updated Feb 14, 2025Feb 14, 2025

• Intro-to-R-mkdocs

  Public
  Python

  •1•0•2•0•Updated Feb 14, 2025Feb 14, 2025

• Intro-to-shell-fasrc-flipped

  Public archive
  Shell training materials for the FAS-RC cluster

  Shell

  •4•5•1•0•Updated Feb 4, 2025Feb 4, 2025

• Intro-to-peak-analysis

  Public
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •5•22•8•0•Updated Feb 4, 2025Feb 4, 2025

• Shell-for-bioinformatics

  Public
  HTML

  •23•42•6•0•Updated Feb 4, 2025Feb 4, 2025

• Investigating-chromatin-biology-ChIPseq

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •38•88•8•0•Updated Feb 4, 2025Feb 4, 2025

• Intro-to-variant-analysis

  Public
  HTML

  •10•30•7•0•Updated Feb 4, 2025Feb 4, 2025

• EpiR

  Public
  Introduction to R for Epi summer program

  SCSS

  •4•3•0•0•Updated Dec 12, 2024Dec 12, 2024

• github_pages_demo

  Public
  My GitHub Pages Demo

  SCSS

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• variant_analysis_germline

  Public
  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• BMI713_Intro_to_HPC

  Public
  Workshop for Intro to Unix

  Shell

  •

  Other

  •14•6•0•0•Updated Oct 10, 2024Oct 10, 2024

• Tools-for-reproducible-research

  Public
  R

  •7•9•15•0•Updated Aug 13, 2024Aug 13, 2024

• shinylive_app

  Public
  My shinylive app

  0•1•0•0•Updated Jul 28, 2024Jul 28, 2024

• BBS230B_2023

  Public
  RNA-seq experimental design and analysis

  SCSS

  •5•5•0•0•Updated May 6, 2024May 6, 2024

• bioinformatics_online

  Public
  Resource list and preparation instructions for online learning and teaching for Bioinformatics

  bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online

  SCSS

  •11•19•0•0•Updated Nov 13, 2023Nov 13, 2023

• publication_perfect

  Public
  Six hour hands-on to creating publication-quality plots in R

  SCSS

  •18•35•5•0•Updated Oct 26, 2023Oct 26, 2023

• testing_github_pages

  Public
  test

  SCSS

  •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

• rnaseq-cb321

  Public
  June 5, 2019

  HTML

  •3•9•0•0•Updated Jun 14, 2023Jun 14, 2023

• Intro-to-ChIPseq

  Public archive
  Intro to ChIPseq using HPC

  SCSS

  •156•301•14•1•Updated Jan 30, 2023Jan 30, 2023

• docker_hbctraining

  Public
  Docker images for training at Harvard Bioinformatics Core

  Dockerfile

  •3•2•0•0•Updated Jan 26, 2023Jan 26, 2023

• git-novice

  Public
  Version Control with Git

  HTML

  •

  Other

  •937•4•0•0•Updated Oct 20, 2022Oct 20, 2022