Skip to content

Commit

Permalink
commit missing files
Browse files Browse the repository at this point in the history
  • Loading branch information
subwaystation committed Jun 15, 2021
1 parent 9c8cf83 commit 20ec2d0
Show file tree
Hide file tree
Showing 5 changed files with 113 additions and 0 deletions.
Binary file modified docs/img/DRB1-3123_unsorted.og.lay.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added docs/img/k.gfa.dot.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Binary file added docs/img/k.gfa.dot_path2graph.png
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
38 changes: 38 additions & 0 deletions test/k.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
H VN:Z:1.0
S 1 CAAATAAG
S 2 A
S 3 G
S 4 T
S 5 C
S 6 TTG
S 7 A
S 8 G
S 9 AAATTTTCTGGAGTTCTAT
S 10 A
S 11 T
S 12 ATAT
S 13 A
S 14 T
S 15 CCAACTCTCTG
P x 1+,3+,5+,6+,8+,9+,11+,12+,14+,15+ 8M,1M,1M,3M,1M,19M,1M,4M,1M,11M
P y 1+,2+,4+,6+,7+,9+,10+,12+,13+,15+ 8M,1M,1M,3M,1M,19M,1M,4M,1M,11M
L 1 + 2 + 0M
L 1 + 3 + 0M
L 2 + 4 + 0M
L 2 + 5 + 0M
L 3 + 4 + 0M
L 3 + 5 + 0M
L 4 + 6 + 0M
L 5 + 6 + 0M
L 6 + 7 + 0M
L 6 + 8 + 0M
L 7 + 9 + 0M
L 8 + 9 + 0M
L 9 + 10 + 0M
L 9 + 11 + 0M
L 10 + 12 + 0M
L 11 + 12 + 0M
L 12 + 13 + 0M
L 12 + 14 + 0M
L 13 + 15 + 0M
L 14 + 15 + 0M
75 changes: 75 additions & 0 deletions test/q.chop.gfa
Original file line number Diff line number Diff line change
@@ -0,0 +1,75 @@
H VN:Z:1.0
S 1 CA DP:i:1 RC:i:2
L 1 + 2 + 0M
S 2 AA DP:i:1 RC:i:2
L 2 + 3 + 0M
S 3 TA DP:i:1 RC:i:2
L 3 + 4 + 0M
S 4 AG DP:i:1 RC:i:2
L 4 + 5 + 0M
L 4 + 6 + 0M
S 5 A DP:i:0 RC:i:0
L 5 + 7 + 0M
L 5 + 8 + 0M
S 6 G DP:i:1 RC:i:1
L 6 + 7 + 0M
L 6 + 8 + 0M
S 7 T DP:i:0 RC:i:0
L 7 + 9 + 0M
S 8 C DP:i:1 RC:i:1
L 8 + 9 + 0M
S 9 TT DP:i:1 RC:i:2
L 9 + 10 + 0M
S 10 G DP:i:1 RC:i:1
L 10 + 11 + 0M
L 10 + 12 + 0M
S 11 A DP:i:0 RC:i:0
L 11 + 13 + 0M
S 12 G DP:i:1 RC:i:1
L 12 + 13 + 0M
S 13 AA DP:i:1 RC:i:2
L 13 + 14 + 0M
S 14 AT DP:i:1 RC:i:2
L 14 + 15 + 0M
S 15 TT DP:i:1 RC:i:2
L 15 + 16 + 0M
S 16 TC DP:i:1 RC:i:2
L 16 + 17 + 0M
S 17 TG DP:i:1 RC:i:2
L 17 + 18 + 0M
S 18 GA DP:i:1 RC:i:2
L 18 + 19 + 0M
S 19 GT DP:i:1 RC:i:2
L 19 + 20 + 0M
S 20 TC DP:i:1 RC:i:2
L 20 + 21 + 0M
S 21 TA DP:i:1 RC:i:2
L 21 + 22 + 0M
S 22 T DP:i:1 RC:i:1
L 22 + 23 + 0M
L 22 + 24 + 0M
S 23 A DP:i:0 RC:i:0
L 23 + 25 + 0M
S 24 T DP:i:1 RC:i:1
L 24 + 25 + 0M
S 25 AT DP:i:1 RC:i:2
L 25 + 26 + 0M
S 26 AT DP:i:1 RC:i:2
L 26 + 27 + 0M
L 26 + 28 + 0M
S 27 A DP:i:0 RC:i:0
L 27 + 29 + 0M
S 28 T DP:i:1 RC:i:1
L 28 + 29 + 0M
S 29 CC DP:i:1 RC:i:2
L 29 + 30 + 0M
S 30 AA DP:i:1 RC:i:2
L 30 + 31 + 0M
S 31 CT DP:i:1 RC:i:2
L 31 + 32 + 0M
S 32 CT DP:i:1 RC:i:2
L 32 + 33 + 0M
S 33 CT DP:i:1 RC:i:2
L 33 + 34 + 0M
S 34 G DP:i:1 RC:i:1
P x 1+,2+,3+,4+,6+,8+,9+,10+,12+,13+,14+,15+,16+,17+,18+,19+,20+,21+,22+,24+,25+,26+,28+,29+,30+,31+,32+,33+,34+ *

0 comments on commit 20ec2d0

Please sign in to comment.