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update sort layout tutorial
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subwaystation committed Feb 1, 2024
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5 changes: 2 additions & 3 deletions docs/rst/commands/odgi_sort.rst
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force-directed graph drawing algorithm minimizes the graph’s energy
function or stress level. It applies stochastic gradient descent
(SGD) to move a single pair of nodes at a time. The path index is
used to pick the terms to move stochastically. If ran with 1 thread
only, the resulting order of the graph is deterministic. The seed is
adjustable.
used to pick the terms to move stochastically. For more details about
the algorithm, please take a look at https://www.biorxiv.org/content/10.1101/2023.09.22.558964v2.

Sorting the paths in a graph my refine the sorting process. For the
users’ convenience, it is possible to specify a whole pipeline of sorts
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