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@parklab

Park Lab at Harvard Medical School

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  1. nozzle nozzle Public

    Nozzle is a report generation toolkit for data analysis pipelines implemented in R.

    R 68 21

  2. NGSCheckMate NGSCheckMate Public

    Software program for checking sample matching for NGS data

    Python 130 53

  3. SigMA SigMA Public

    Mutational signature analysis for low statistics SNV data

    R 63 21

Repositories

Showing 10 of 40 repositories
  • HiScanner Public
    parklab/HiScanner’s past year of commit activity
    C 7 MIT 1 0 0 Updated Apr 4, 2025
  • parklab.github.io Public
    parklab/parklab.github.io’s past year of commit activity
    HTML 0 1 0 1 Updated Apr 2, 2025
  • xTea Public

    Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

    parklab/xTea’s past year of commit activity
    Python 108 23 8 2 Updated Feb 18, 2025
  • hiscanner_demo Public
    parklab/hiscanner_demo’s past year of commit activity
    2 MIT 0 0 0 Updated Feb 8, 2025
  • bamsnap Public
    parklab/bamsnap’s past year of commit activity
    HTML 119 MIT 26 20 0 Updated Nov 8, 2024
  • SPECIFICANCER_data Public
    parklab/SPECIFICANCER_data’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Sep 20, 2024
  • Salamander Public

    Salamander is a non-negative matrix factorization framework for signature analysis

    parklab/Salamander’s past year of commit activity
    Python 9 MIT 0 0 0 Updated Aug 30, 2024
  • denovo_retroelements_kids_first Public
    parklab/denovo_retroelements_kids_first’s past year of commit activity
    0 0 0 0 Updated Aug 16, 2024
  • SigMA Public

    Mutational signature analysis for low statistics SNV data

    parklab/SigMA’s past year of commit activity
    R 63 21 10 0 Updated Aug 7, 2024
  • SCAN2 Public

    SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)

    parklab/SCAN2’s past year of commit activity
    Python 12 6 12 0 Updated Aug 3, 2024
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