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pblaney/README.md

Bioinformatics | Computational Biology | Genomics | Epigenetics | Nuclear Organization

Hematologic Malinancies | Plasma Cell Disorders | Multiple Myeloma | Waldenström Macroglobulinemia

R | Python | Nextflow | SLURM | AWS | Docker | Singularity

Genomic Data Science Libraries

  • devgru with docs pending ...

    A developmental R environment for a suite of GenomicRanges utilities

  • mgp1000 with docs

    Comprehensive bioinformatics Nextflow pipeline for the large-scale collaborative analysis of Multiple Myeloma genomes in an effort to delineate the broad spectrum of somatic events

  • subscriptr

    A collection of SLURM batch submission and accessory scripts for BigPurple (Now upgraded to UltraViolet) - NYU Langone Health HPC

  • scXploringTheNiche

    This is a collection of Rmarkdown files associated with analysis of scRNA-seq expression matricies generated in various published studies

Publication Analysis Respositories

First/Co-First Author

  • myelomaNonCodingGenome with manuscript pending ...
  • Clin-Cancer-Res-29-2023 with manuscript

    Multiomic Mapping of Acquired Chromosome 1 Copy-Number and Structural Variants to Identify Therapeutic Vulnerabilities in Multiple Myeloma

  • Leukemia-36-2022 with manuscript

    Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length

Contributing Author

ORCID iD icon ORCID

Pinned Loading

  1. mgp1000 mgp1000 Public

    Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

    Nextflow 11 5

  2. devgru devgru Public

    Developmental environment for GenomicRanges utilities

    R 1

  3. battenberg battenberg Public

    Forked from Wedge-lab/battenberg

    Battenberg R package for subclonal copynumber estimation

    R

  4. mmsig mmsig Public

    Forked from evenrus/mmsig

    A method for fitting a known mutational signature reference to mutational catalogues from cancer samples

    R

  5. Leukemia-36-2022 Leukemia-36-2022 Public

    Repository for analysis in "Improving prognostic assignment in older adults with multiple myeloma using acquired genetic features, clonal hemopoiesis and telomere length." from Boyle, E.M., William…

    R