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pombo-lab

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  1. gamtools gamtools Public

    Processing, quality control and analysis of GAM datsets

    Python 9 14

  2. Meltron Meltron Public

    Forked from DominikSzabo1/Meltron

    a statistical framework to detect differences in chromatin contact density at genomic regions of interest

    R 4

  3. WinickNg_Kukalev_Harabula_Nature_2021 WinickNg_Kukalev_Harabula_Nature_2021 Public

    Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

    Python 4 1

  4. multiplex-gam-2023 multiplex-gam-2023 Public

    Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

    Jupyter Notebook 4 1

  5. GAM_trans_cis_ratio GAM_trans_cis_ratio Public

    Forked from DominikSzabo1/GAM_trans_cis_ratio

    Calculation of trans-cis NPMI ratios from GAM data

    R 1

  6. gamtools-guix gamtools-guix Public

    Forked from rbeagrie/gamtools-guix

    Guix channel definition for gamtools

    Scheme 1

Repositories

Showing 10 of 11 repositories
  • GAM_phaser Public
    Perl 0 0 0 0 Updated Apr 7, 2025
  • multiplex-gam-2023 Public

    Analysis scripts for Multiplex-GAM paper (Beagrie, Thieme, Annunziatella et al. 2023)

    Jupyter Notebook 4 1 1 0 Updated Jun 24, 2024
  • Irastorza-Azcarate_Kukalev_Kempfer_2024 Public Forked from batxes/Irastorza-Azcarate_Kukalev_Kempfer_2024

    Code used to plot the figures in "Extensive folding variability between homologous chromosomes in mammalian cells"

    Python 0 1 0 0 Updated May 29, 2024
  • MELTRONIC Public Forked from DominikSzabo1/MELTRONIC

    Detection of chromatin melting and condensation events in regions of interest from GAM data

    R 0 MIT 1 0 0 Updated Mar 26, 2024
  • 3DOmics Public
    Shell 1 0 0 0 Updated Aug 29, 2023
  • gamtools Public

    Processing, quality control and analysis of GAM datsets

    Python 9 Apache-2.0 14 7 4 Updated Jun 13, 2023
  • gamtools-guix Public Forked from rbeagrie/gamtools-guix

    Guix channel definition for gamtools

    Scheme 1 1 0 0 Updated Oct 28, 2022
  • WinickNg_Kukalev_Harabula_Nature_2021 Public

    Collection of supplementary data and code for the publication W. Winick-Ng, A. Kukalev, I. Harabula "Cell-type specialization is encoded by specific chromatin topologies" (2021) Nature

    Python 4 1 0 0 Updated May 16, 2022
  • 4DN_JAWG_H1 Public
    R 0 1 0 0 Updated Jan 13, 2022
  • GAM_trans_cis_ratio Public Forked from DominikSzabo1/GAM_trans_cis_ratio

    Calculation of trans-cis NPMI ratios from GAM data

    R 1 MIT 1 0 0 Updated Nov 26, 2021

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