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Update vcf2maf configuration to adhere to hg38 as reference genome #34

Merged
merged 6 commits into from
Mar 5, 2025
Merged

Update vcf2maf configuration to adhere to hg38 as reference genome #34

merged 6 commits into from
Mar 5, 2025

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famosab
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@famosab famosab commented Mar 4, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@famosab famosab linked an issue Mar 4, 2025 that may be closed by this pull request
HGVS and t_alt ann using GATK.GRCh38 #33
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@famosab famosab merged commit 8733dc5 into qbic-pipelines:dev Mar 5, 2025
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@mapo9 mapo9 mapo9 approved these changes

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HGVS and t_alt ann using GATK.GRCh38
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