Highlights
- Pro
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Workflow Description Language (WDL) scripts for common vg workflows
The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…
A framework for creating grounded instruction based datasets and training conversational domain expert Large Language Models (LLMs).
Ultima scripts related to downstream processing of WGS, MRD, methylation analysis
UltimaGenomics repository for workflows compatible with AWS HealthOmics
A beautiful, simple, clean, and responsive Jekyll theme for academics
Python-based preprocessing software for Illumina methylation arrays
Collection of notebook guides created by the Brev.dev team!
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
A minimal PyTorch re-implementation of the OpenAI GPT (Generative Pretrained Transformer) training
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
dslarm / bwa-mem2
Forked from bwa-mem2/bwa-mem2The next version of bwa-mem
Generating and Imputing Tabular Data via Diffusion and Flow XGBoost Models
Platform to experiment with the AI Software Engineer. Terminal based. NOTE: Very different from https://gptengineer.app
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
minhhpham / bwa
Forked from lh3/bwaBurrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Enhanced ChatGPT Clone: Features Agents, Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message search, Code…
Classifying tumor types based on Whole Genome Sequencing (WGS) data
Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning
The ChatGPT Retrieval Plugin lets you easily find personal or work documents by asking questions in natural language.
Clinical sequencing-based primary site classifier