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@qupath

QuPath

Open source software for bioimage analysis
README.md

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  1. qupath qupath Public

    QuPath - Open-source bioimage analysis for research

    Java 1.2k 307

  2. qupath-docs qupath-docs Public

    QuPath documentation

    Python 20 24

  3. qupath-extension-stardist qupath-extension-stardist Public

    QuPath extension to run StarDist nucleus detection

    Java 43 7

  4. qupath-extension-djl qupath-extension-djl Public

    A QuPath extension for working with Deep Java Library (https://djl.ai)

    Java 8 6

  5. qupath-extension-omero-web qupath-extension-omero-web Public

    QuPath extension to work with images through OMERO's web API

    Java 10 11

  6. qupath-extension-bioimageio qupath-extension-bioimageio Public

    A QuPath extension for working with the Bioimage Model Zoo (https://bioimage.io)

    Java 5 4

Repositories

Showing 10 of 49 repositories
  • qupath-extension-align Public

    QuPath extension to interactively align images

    qupath/qupath-extension-align’s past year of commit activity
    Java 24 GPL-3.0 9 1 0 Updated Aug 7, 2025
  • qupath Public

    QuPath - Open-source bioimage analysis for research

    qupath/qupath’s past year of commit activity
    Java 1,189 GPL-3.0 307 36 5 Updated Aug 5, 2025
  • qupath-extension-omero Public

    QuPath extension to work with images through OMERO's APIs

    qupath/qupath-extension-omero’s past year of commit activity
    Java 5 Apache-2.0 2 2 0 Updated Aug 4, 2025
  • qupath-catalog Public

    The catalog containing QuPath extensions developed by the QuPath team

    qupath/qupath-catalog’s past year of commit activity
    0 Apache-2.0 1 2 0 Updated Jul 28, 2025
  • qupath-extension-py4j Public

    A QuPath extension for linking up to Python via Py4J (https://www.py4j.org)

    qupath/qupath-extension-py4j’s past year of commit activity
    Java 0 Apache-2.0 3 0 0 Updated Jul 28, 2025
  • qupath-extension-stitching Public

    A QuPath extension to combine TIFF images

    qupath/qupath-extension-stitching’s past year of commit activity
    Java 1 Apache-2.0 0 0 0 Updated Jul 23, 2025
  • qupath-extension-instanseg Public

    The official QuPath extension for InstanSeg

    qupath/qupath-extension-instanseg’s past year of commit activity
    Java 24 Apache-2.0 6 5 1 Updated Jul 17, 2025
  • extension-manager Public

    A manager for catalogs and extensions.

    qupath/extension-manager’s past year of commit activity
    Java 0 Apache-2.0 3 0 0 Updated Jul 16, 2025
  • actions Public

    GitHub actions for QuPath and related repositories

    qupath/actions’s past year of commit activity
    Shell 0 Apache-2.0 1 0 0 Updated Jul 3, 2025
  • javadoc-viewer Public

    A simple JavaFX Javadoc viewer

    qupath/javadoc-viewer’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Jul 2, 2025
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