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tic-db

tic-db #2351

Workflow file for this run

## tic GitHub Actions template: linux
## revision date: 2021-06-27
# [Custom header]
on:
workflow_dispatch:
push:
branches:
- main
pull_request:
# for now, CRON jobs only run on the default branch of the repo (i.e. usually on master)
schedule:
# * is a special character in YAML so you have to quote this string
- cron: "0 4 * * *"
name: tic-db
jobs:
all:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
# use a different tic template type if you do not want to build on all listed platforms
- { os: ubuntu-latest, r: "release" }
services:
postgres:
image: kartoza/postgis
ports:
- 5432:5432
env:
# otherwise remotes::fun() errors cause the build to fail. Example: Unavailability of binaries
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.cran }}
# make sure to run `tic::use_ghactions_deploy()` to set up deployment
TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }}
# prevent rgl issues because no X11 display is available
RGL_USE_NULL: true
# if you use bookdown or blogdown, replace "PKGDOWN" by the respective
# capitalized term. This also might need to be done in tic.R
BUILD_PKGDOWN: ${{ matrix.config.pkgdown }}
# macOS >= 10.15.4 linking
SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
# use GITHUB_TOKEN from GitHub to workaround rate limits in {remotes}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
Ncpus: 4
# LaTeX. Installation time:
# Linux: ~ 1 min
# macOS: ~ 1 min 30s
# Windows: never finishes
- uses: r-lib/actions/setup-tinytex@v2
if: matrix.config.latex == 'true'
- uses: r-lib/actions/setup-pandoc@v2
# set date/week for use in cache creation
# https://github.community/t5/GitHub-Actions/How-to-set-and-access-a-Workflow-variable/m-p/42970
# - cache R packages daily
# - name: "[Cache] Prepare daily timestamp for cache"
# if: runner.os != 'Windows'
# id: date
# run: echo "::set-output name=date::$(date '+%d-%m')"
# - name: "[Cache] Cache R packages"
# if: runner.os != 'Windows'
# uses: pat-s/always-upload-cache@v2
# with:
# path: ${{ env.R_LIBS_USER }}
# key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
# restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-${{steps.date.outputs.date}}
- name: "[Stage] [Linux] Install required system libs"
if: runner.os == 'Linux'
run: sudo apt install libcurl4-openssl-dev libgit2-dev
# for some strange Windows reason this step and the next one need to be decoupled
- name: "[Stage] Prepare"
run: |
Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'source')"
Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'source')"
- name: "[Custom block] [Linux] Install spatial libraries"
if: runner.os == 'Linux'
run: sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev
- name: "[Custom block] [macOS] Install spatial libraries"
if: runner.os == 'macOS'
run: |
# conflicts with gfortran from r-lib/actions when linking gcc
rm '/usr/local/bin/gfortran'
brew install pkg-config gdal proj geos
- name: "[Stage] [macOS] Install libgit2"
if: runner.os == 'macOS'
run: brew install libgit2
- name: "[Stage] [macOS] Install system libs for pkgdown"
if: runner.os == 'macOS' && matrix.config.pkgdown != ''
run: brew install harfbuzz fribidi
- name: "[Stage] [Linux] Install system libs for pkgdown"
if: runner.os == 'Linux' && matrix.config.pkgdown != ''
run: sudo apt install libharfbuzz-dev libfribidi-dev
# Try to automatically check for system dependencies and install them
# Note: this might not catch all required system libs and manual action might be needed
- name: "[Stage] [Linux] Install linux system dependencies"
if: runner.os == 'Linux'
run: |
while read -r cmd
do
eval sudo $cmd
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
- name: "[Stage] Install"
if: matrix.config.os != 'macOS-latest' || matrix.config.r != 'devel'
run: Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
# macOS devel needs its own stage because we need to work with an option to suppress the usage of binaries
- name: "[Stage] Prepare & Install (macOS-devel)"
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel'
run: |
echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
- name: "[Stage] Script"
run: Rscript -e 'tic::script()'
- name: "[Stage] After Success"
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
run: Rscript -e "tic::after_success()"
- name: "[Stage] Upload R CMD check artifacts"
if: failure()
uses: actions/upload-artifact@v4
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check