Fixed crash on large input datasets. #5
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| name: GitHub Actions CI | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| paths-ignore: | |
| - '**.md' | |
| workflow_dispatch: | |
| jobs: | |
| ######################################################################################## | |
| make: | |
| name: Make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: get tags | |
| run: | | |
| cd ./libs/igraph | |
| git fetch --tags origin | |
| - name: make | |
| run: | | |
| make -j32 CXX=${{matrix.compiler}} | |
| cp ./clusty ./clusty-${{matrix.compiler}} | |
| make clean | |
| - name: tar artifacts | |
| run: tar -cvf clusty.tar ./clusty-${{matrix.compiler}} ./test/cmp.py ./test/vir61.* | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./clusty.tar | |
| ######################################################################################## | |
| vir61-linkage: | |
| name: Vir61 | |
| needs: make | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| machine: [ubuntu-latest, macOS-12] | |
| compiler: [g++] | |
| algo: [single, complete] | |
| threshold: [95, 70] | |
| runs-on: ['${{ matrix.machine }}'] | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: executable-artifact-${{ matrix.machine }} | |
| path: ./ | |
| - name: untar artifacts | |
| run: | | |
| tar -xf clusty.tar | |
| - name: ${{matrix.algo}}, ${{matrix.threshold}} (with representatives, reordered columns) | |
| run: | | |
| ./clusty-${{matrix.compiler}} --algo ${{matrix.algo}} --objects-file ./test/vir61.list --similarity --min ani 0.${{matrix.threshold}} --id-cols id2 id1 --distance-col ani ./test/vir61.ani vir61.${{matrix.algo}}.${{matrix.threshold}} --out-representatives | |
| python ./test/cmp.py vir61.${{matrix.algo}}.${{matrix.threshold}} ./test/vir61.${{matrix.algo}}.${{matrix.threshold}}.python.csv | |