Remove alignment vignette

rformassspectrometry · Oct 14, 2024 · e6bef3a · e6bef3a
1 parent 733934c
commit e6bef3a
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Showing 3 changed files with 6 additions and 406 deletions.
diff --git a/.github/workflows/build_deploy.yaml b/.github/workflows/build_deploy.yaml
@@ -55,9 +55,9 @@ jobs:
           install.packages('pkgdown')
         shell: Rscript {0}
 
-      - name: Install package
-        if: github.ref == 'refs/heads/main'
-        run: R CMD INSTALL .
+      # - name: Install package
+      #   if: github.ref == 'refs/heads/main'
+      #   run: R CMD INSTALL .
 
       - name: Build site
         env:

diff --git a/Dockerfile b/Dockerfile
@@ -26,7 +26,7 @@ RUN Rscript -e "BiocManager::install(c('RCurl', 'xcms', 'MsExperiment', 'Summari
     Rscript -e "BiocManager::install('sneumann/xcms', ref = 'phili', ask = FALSE)"
 
 ## Install the current package with vignettes
-RUN Rscript -e "devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = TRUE)"
+RUN Rscript -e "devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = FALSE)"
 
 USER rstudio
 
@@ -39,4 +39,6 @@ USER root
 RUN cp /home/rstudio/vignettes/preprocessed_lcms1.RData /shared/data/
 RUN chmod -R 777 /shared
 
+RUN Rscript -e "devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = TRUE)"
+
 RUN find vignettes/ -name "*.html" -type f -delete && find vignettes/ -name "*_files" -type d -exec rm -r {} +