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update to docker 3.20
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philouail committed Nov 8, 2024
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4 changes: 2 additions & 2 deletions Dockerfile
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FROM bioconductor/bioconductor_docker:devel
FROM bioconductor/bioconductor_docker:RELEASE_3_20

LABEL name="rformassspectrometry/metabonaut" \
url="https://github.com/rformassspectrometry/metabonaut" \
Expand All @@ -15,7 +15,7 @@ RUN curl -LO https://quarto.org/download/latest/quarto-linux-amd64.deb
RUN gdebi --non-interactive quarto-linux-amd64.deb

## Install the required packages
RUN Rscript -e "BiocManager::install(c('RforMassSpectrometry/MsIO', 'RforMassSpectrometry/MsBackendMetaboLights'), ask = FALSE, dependencies = TRUE)"
RUN Rscript -e "BiocManager::install('RforMassSpectrometry/MsIO', ask = FALSE, dependencies = TRUE)"

## Install the current package with vignettes
RUN Rscript -e "devtools::install('.', dependencies = TRUE, type = 'source', build_vignettes = TRUE, repos = BiocManager::repositories())"
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